Publications
Publications of Computational BioMedicine Laboratory (CBML)
Periodicals (557)
Journal Articles
- Kampas, G., Vasileiou, A., Antonakakis, M., Zervakis, M. , Spanakis, M., Sakkalis, V., Leskovsky, P., Carballido, S.S., Gliga, R., Vinkovic, D., & Pecnik, B. (2022). Design of Sensors’ Technical Specifications for Airborne Surveillance at Borders. , 5(4), 58-83.
- Ioannidis, G., Goumenakis, M, Stefanis, I, Karantanas, A., & Marias, K. (2022). Quantification and classification of contrast enhanced ultrasound breast cancer data: a preliminary study. , MDPI Diagnostics https://doi.org/10.3390/diagnostics12020425.
- Kourou, K, Manikis, G., Poikonen-Saksela, P, Mazzocco, K., Pat-Horenczyk, R., Sousa, B., Albino , O-A., Mattson, J., Roziner, I., Pettini, G., Kondylakis, H., Marias, K., Karademas, E, Simos, P., & Fotiadis, D.I. (2021). A machine learning-based pipeline for modeling medical, socio-demographic, lifestyle and self-reported psychological traits as predictors of mental health outcomes after breast cancer diagnosis: An initial effort to define resilience effects. Computers in Biology and Medicine, 131.
- Trivizakis, E., Ioannidis, G., Souglakos, I., Karantanas, A., Tzardi, M., & Marias, K. (2021). A neural pathomics framework for classifying colorectal cancer histopathology images based on wavelet multi-scale texture analysis . , Scientific Reports https://doi.org/10.1038/s41598-021-94781-6.
- Zaridis, D.G., Mylona, E., Tachos, N., Marias, K., Papanikolaou, N., Tsiknakis, M.N., & Fotiadis, D.I. (2021). A new smart-cropping pipeline for prostate segmentation using deep learning networks. , arXiv:2107.02476v2.
- Kellou-Menouer, K., Kardoulakis, N., Troullinou, G., Kedad, Z., Plexousakis, D., & Kondylakis, H. (2021). A survey on semantic schema discovery. The VLDB Journal , DOI: https://doi.org/10.1007/s00778-021-00717-x.
- Savaki, E., Kavroulakis, E., Papadaki, E., Maris, Th.G., & Simos, P.G. (2021). Action observation responses are influenced by movement kinematics and target identity. , Jul 14:bhab225..
- Klontzas, M., Kakkos, GA., Papadakis Z., G., Marias, K., & Karantanas, A. (2021). Advanced clinical imaging for the evaluation of stem cell based therapies.. , 21(9), 1253-1264, Expert Opin Biol Ther https://doi.org/10.1080/14712598.2021.1890711.
- Antypa, D., Simos, N. J., Kavroulakis, E., Bertsias, G., Fanouriakis, A., Sidiropoulos, P., Boumpas, D., & Papadaki, E. (2021). Anxiety and depression severity in neuropsychiatric SLE are associated with perfusion and functional connectivity changes of the frontolimbic neural circuit: a resting-state f(unctional) MRI study. , 8(1), e000473.
- Basta, M, Zaganas, I., Simos, P.G., Koutentaki, E, Dimovasili, C., Mathioudakis, L., Bourbouli, M., Panagiotakis , S., Kapetanaki, S., & Vgontzas, A. N (2021). Apolipoprotein E ε4 (APOE*ε4) Allele Is Associated with Long Sleep Duration Among Elderly with Cognitive Impairment. , 79, 763-771.
- Tsafas, V., Oikonomidis, I., Gavgiotaki, E., Tzamali, E., Tzedakis, G., Fotakis, C., Athanassakis, I., & Filippidis, G. (2021). Application of a deep-learning technique to non-linear images from human tissue biopsies for shedding new light on breast cancer diagnosis. , J Biomed Health Inform doi:10.1109/JBHI.2021.3104002..
- Britzolakis, A, Kondylakis, H., & Papadakis, N. (2021). AthPPA: A Data Visualization Tool for Identifying Political Popularity over Twitter. Information. Information, 12-8.
- Koumarela, C., Kokkinaki, T., Giannakakis, G., & Koutra , K. (2021). Autonomic nervous system maturation and emotional coordination in interactions of preterm and full‐term infants with their parents: Protocol for a multimethod study. , 10(4), e28089.
- Ioannidis, G., Christensen, S, Nikiforaki, K., Trivizakis, E., Perisinakis, K., Hatzidakis, A., Karantanas, A., Reyes, M., & Lansberg, M, Marias, K. (2021). Cerebral CT Perfusion in Acute Stroke: The Effect of Lowering the Tube Load and Sampling Rate on the Reproducibility of Parametric Maps. , 11(6), MDPI (2075-4418/ -/ https://www.mdpi.com/2075-4418/11/6/1121), 10.3390/diagnostics11061121.
- Papadakis, E., Kavroulakis, E., Manolitsi, K., Makrakis, D, Papastefanakis , E., Tsagaraki, P., Papadopoulou, S., Zampetakis, A., Malliou, M., Vakis, A., & Simos, P.G. (2021). Cerebral perfusion disturbances in chronic mild traumatic brain injury correlate with psychoemotional outcomes. , 15, 1438-49.
- Karademas, E, Simos, P.G., Pat-Horenczyk, R., Roziner, I., Mazzocco, K., Sousa, B., Oliveira-Maia, A., Stamatakos, G.S., Cardoso, F., Frasquilho, D., Kolokotroni, E., Marzorati, C., Mattson, J., Pettini, G., & Poikonen-Saksela, P (2021). Cognitive, emotional, and behavioral mediators of the impact of coping self-efficacy on adaptation to breast cancer: An international prospective study. , 30(9), 1555-1562, Multicenter Study, Psychology doi: 10.1002/pon.5730.
- Kanterakis, A., Kanakaris, N., Koutoulakis, M., Pitianou, K., Karacapilidis, N., Koumakis, L., & Potamias, G.A. (2021). Converting Biomedical Text Annotated Resources into FAIR Research Objects with an Open Science Platform. , 11(20), 9648, https://doi.org/10.3390/app11209648.
- Hurley-Novatny, A., Karantanas, A., Papadakis Z., G., Bhattacharyya, T., & Jha, S. (2021). Cross-Sectional Imaging Useful in Melorheostosis. , 5(4), e10472.
- Papadakis Z., G., Karantanas, A., Marias, K., & Millo, C. (2021). Current status and future prospects of PET-imaging applications in patients with gastro- entero-pancreatic neuroendocrine tumors (GEP-NETs).. , Eur J Radiol.
- Magdalini, S., Gui, D., Mari, P., Merialdo, M., Spanakis, E.G., Sakkalis, V., & Bonomi, S. (2021). Cyberthreats to Hospitals: Panacea, a Toolkit for People-Centric Cybersecurity. , 16(3), DOI: 10.33423/jsis.v16i3.4449.
- Tsiknakis, N, Theodoropoulos, D., Manikis, G., Ktistakis , E, Boutsora, O., Berto, A, Scarpa, F, Scarpa, A, Fotiadis, D.I., & Marias, K. (2021). Deep learning for diabetic retinopathy detection and classification based on fundus images: A review. , 104-599, Computers in Biology and Medicine (0010-4825), https://doi.org/10.1016/j.compbiomed.2021.104599.
- Trivizakis, E., Souglakos, I., Karantanas, A., & Marias, K. (2021). Deep Radiotranscriptomics of Non-Small Cell Lung Carcinoma for Assessing Molecular and Histology Subtypes with a Data-Driven Analysis. , 11(12), Diagnostics https://doi.org/10.3390/diagnostics11122383 .
- Kondylakis, H., Astyrakakis , N., Papatsaroucha , D., Koumarelis , A., Kritikakis , E., Kalkanis , K., Skepasianos, I., Klados , S., & Papadakis, N. (2021). Delta: A Modular Ontology Evaluation System. Information, 12-8.
- Manikis, G., Nikiforaki, K., Lagoudaki, E., Bree, E, Maris, Th.G., Marias, K., & Karantanas, A. (2021). Differentiating low from high-grade soft tissue sarcomas using post-processed imaging parameters derived from multiple DWI models. , European Journal of Radiology https://doi.org/10.1016/j.ejrad.2021.109660.
- Spanakis, M., Patelarou , A., Patelarou, E., & Tzanakis, N. (2021). Drug Interactions for Patients with Respiratory Diseases Receiving COVID-19 Emerged Treatments. , 18(21), doi: 10.3390/ijerph182111711.
- kallergis, G., & Sfakianakis, S, Zervakis, M. , Spanakis, M. (2021). Drugs with SMILES Similar to Coxibs. .
- Kobas, B., Koth, S.C., Nkurikiyeyezu, K., Giannakakis, G., & Auer, T. (2021). Effect of exposure time on thermal behaviour: A psychophysiological approach. , 2(4), 863-885.
- Makanikas, K., Andreou, G., Simos, P.G., & Chartomatsidou, E. (2021). Effects of Obstructive Sleep Apnea Syndrome (OSAS) and medical comorbidities on language abilities. , Frontiers in Neurology 12:721334.
- Zervou, M.-A., Doutsi, E., Pavlidis , P., & Tsakalides, P. (2021). Efficient dynamic analysis of low-similarity proteins for structural class prediction. , 1328-1332, https://doi.org/10.23919/Eusipco47968.2020.9287619.
- Spanakis, E.G., Sfakianakis, S, Bonomi, S., Ciccotelli, C., Magdalini, S., & Sakkalis, V. (2021). Emerging and established trends to support secure Health Information Exchange. , Front. Digit. Health https://doi.org/10.3389/fdgth.2021.636082.
- Kontopodis, E., Papadaki, E., Trivizakis, E., Maris, Th.G., Simos, P.G., Papadakis Z., G., Tsatsakis, A, Spandidos, D, Karantanas, A., & Marias, K. (2021). Emerging deep learning techniques using magnetic resonance imaging data applied in multiple sclerosis and clinical isolated syndrome patients.. , 22(4), Experimental and Therapeutic Medicine DOI: 10.3892/etm.2021.10583.
- Kavroulakis, E., Simos, P.G., Maris, Th.G., Zaganas, I., Panagiotakis , S., & Papadaki, E. (2021). Evidence of Age-Related Hemodynamic and Functional Connectivity Impairment: A Resting State fMRI Study. , 12:633500..
- Primetis, E., Chavlis, S., & Pavlidis , P. (2021). Evolutionary models of amino acid substitutions based on the tertiary structure of their neighborhoods. , 89(11), 1565-1576, Proteins doi: 10.1002/prot.26178..
- Koumakis, L., Schera, F., Parker, H. , Bonotis, P., Chatzimina, M., Argyropaidas, P , Zacharioudakis, G., Schäfer, M., Kakalou, C., Karamanidou, C., Didi, J., Kazantzaki, E., Scarfo, L., Marias, K., & Natsiavas , P. (2021). Fostering Palliative Care Through Digital Intervention: A Platform for Adult Patients With Hematologic Malignancies. , Front. Digit. Health https://doi.org/10.3389/fdgth.2021.730722.
- Lekadir, K., Osuala, R., Gallin, C., Lazrak, N., Kushibar, K., Tsakou, G., Ausso, S., Alberich, L.C., Marias, K., Tsiknakis, M.N., Colantonio, S., Papanikolaou, N., Salahuddin, Z., Woodruff, H.C., Lambin , P., & Martı-Bonmatı, L. (2021). FUTURE-AI: Guiding Principles and Consensus Recommendations for Trustworthy Artificial Intelligence in Medical Imaging. , https://arxiv.org/pdf/2109.09658.pdf.
- Oulas, A., Zanti , M., Tomazou, M., Zachariou, M., Minadakis, G., Bourdakou, M.M., Pavlidis , P., & Spyrou, G.M. (2021). Generalized linear models provide a measure of virulence for specific mutations in SARS-cov-2 strains. , 16(11), 1-17, https://doi.org/10.1371/journal.pone.0238665.
- Douka, M., Vassalou, E.E., Plagou, AP., & Karantanas, A. (2021). Imaging of shoulder arthropathies. , 6(1), 35-55.
- Spanakis, M., Roubedaki, M., Zografakis-Sfakianakis, M., Patelarou, E., & Patelarou , A. (2021). Impact of adverse drug reactions in patients with end stage renal disease in Greece. , 17(23), Int J Environ Res Public Health 2020 https://doi.org/10.3390/ijerph17239101.
- Kosteletou, E., Simos, P.G., Kavroulakis, E., Antypa, D., Maris, Th.G., Liavas, A.P., Karakasis, P.A., & Papadaki, E. (2021). Improving the sensitivity of task-related fMRI data using generalized canonical correlation analysis.
- Kosteletou, E., Simos, P.G., Kavroulakis, E., Antypa, D., Maris, Th.G., Liavas, A.P., Karakasis, P.A., & Papadakis, E. (2021). Improving the Sensitivity of Task-Related Functional Magnetic Resonance Imaging Data Using Generalized Canonical Correlation Analysis. .
- Klontzas, M., & Karantanas, A. (2021). Incorporating engineering principles in radiology education: Are we ready to face the future?. , 102(4), 195-196, Editorial Diagn Interv Imaging doi: 10.1016/j.diii.2021.02.002..
- Kouroubali, A., Kondylakis, H., & Katehakis, D.G. (2021). Integrated Care in the Era of COVID-19: Turning Vision Into Reality With Digital Health. Frontiers in Digital Health, 3(83), DOI: 10.3389/fdgth.2021.647938.
- Tsiknakis, N, Spanakis, C., Tsompou, P., Karanasiou, G., Sakellarios, A., Rigas, G., Kyriakidis, S., Papafaklis, M., Nikopoulos, S., & Gijsen, F. (2021). IVUS Longitudinal and Axial Registration for Atherosclerosis Progression Evaluation. , 11(8), 1513, Diagnostics https://doi.org/10.3390/diagnostics11081513.
- Boursianis, T., Kalaitzakis, G., Pappas, E., Karantanas, A., & Maris, Th.G. (2021). MRI diffusion phantoms: ADC and relaxometric measurement comparisons between polyacrylamide and agarose gels. , Eur J Radiol doi: 10.1016/j.ejrad.2021.109696.
- Klontzas, M., Vassalou, E.E., & Karantanas, A. (2021). MRI findings of acute anterior instability of the knee in the absence of recent trauma.. , Acta Radiol.:2841851211035910.
- Manikis, G., Ioannidis, G., Siakallis, L., Nikiforaki, K., Iv., M., Vozlic, D., Surlan-Popovic, K., Wintermark, M., Bisdas, S., & Marias, K. (2021). Multicenter DSC-MRI based radiomics predict IDH mutation in gliomas. , Multidisciplinary Digital Publishing Institute ,Cancers: MDPI https://doi.org/10.3390/cancers13163965.
- Panou , T., Kavroulakis, E., Mastorodemos, V., Pouli, S., Kalaitzakis, G., Spyridaki, E., Maris, Th.G., Simos, P.G., & Papadaki, E. (2021). Myelin content changes in Clinically Isolated Syndrome and Relapsing-Remitting Multiple Sclerosis: associations with lesion type and severity of visuomotor impairment. , 103-108, Multiple Sclerosis and Related Disorders.
- Tzagkarakis, E, Kondylakis, H., Vardakis, G., & Papadakis, N. (2021). Ontology Based Governance for Employee Services. Algorithms, 14-4.
- Zervoudakis, S, Marakakis, M., Kondylakis, H., & Goumas , S. (2021). OpinionMine: A Bayesian-based framework for opinion mining using Twitter Data. Machine Learning with Applications, 3.
- Trivizakis, E., Metzakis, I, Papagiannakis, S, Lagoudaki, E., & Marias, K. (2021). Pathomics and Deep learning Classification of a heterogeneous fluorescence histology image dataset. Applied Sciences , 11,9, MDPI (2076-3417/ -/ https://www.mdpi.com/2076-3417/11/9/3796), 10.3390/app11093796.
- Oraiopoulou, M.E., Tzamali, E., Papamattheakis, J., & Sakkalis, V. (2021). Phenocopying Glioblastoma: A Review. , Rev Biomed Eng doi: 10.1109/RBME.2021.3111744.
- Morel, B., Barbera, P., Czech, L., Bettisworth, B., Hübner, L., Lutteropp, S., Serdari, D., Kostaki, E.G., Mamalaki, M., Kozlov, A., Pavlidis , P., Paraskevis, D., & Stamatakis, A. (2021). Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult. , 38(5), 1777-1791, https://doi.org/10.1093/molbev/msaa314.
- Shekhar, S., Irizarry-Caro , JA., Sinaii, N., Gahl, W. A., Estrada-Veras, J. I., Dave, R., Gochuico, BR., Papadakis Z., G., Patronas, NJ., Stratakis, C., & Hannah-Shmouni, F. (2021). Pituitary Imaging Abnormalities and Related Endocrine Disorders in Erdheim-Chester Disease. , 13(16), 4126, Cancers (Basel).
- Tampakaki, M, Oraiopoulou, M.E., Tzamali, E., Tzedakis, G., Makatounakis, V, Zacharakis, G., Papamatheakis, J., & Sakkalis, V. (2021). PML Differentially Regulates Growth and Invasion in Brain Cancer. , 22(12), (1422-0067), 10.3390/ijms22126289.
- Tampakaki, M, Oraiopoulou, M.E., Tzamali, E., Tzedakis, G., Makatounakis, V, Zacharakis, G., Papamattheakis, J., & Sakkalis, V. (2021). PML Differentially Regulates Growth and Invasion in Brain Cancer. , 22(12), IJMS 10.3390/ijms22126289.
- Vasilarou, M., Alachiotis , N., Garefalaki, J., Beloukas, A., & Pavlidis , P. (2021). Population genomics insights into the first wave of covid-19. , 11(2), 1-19, Life https://doi.org/10.3390/life11020129.
- Spanakis, M., Melissourgaki, M., Lazopoulos, G., Patelarou , A., & Patelarou, E. (2021). Prevalence and clinical significance of drug–drug and drug–dietary supplement interactions among patients admitted for cardiothoracic surgery in Greece. , 13(2), 239, doi: 10.3390/pharmaceutics13020239..
- Zervoudakis, P., Kondylakis, H., Spyratos, N., & Plexousakis, D. (2021). Query Rewriting for Incremental Continuous Query Evaluation in HIFUN. Algorithms, 14(5), DOI: https://doi.org/10.3390/a14050149.
- Theodoris, C., Low, T.M., Pavlidis , P., & Alachiotis , N. (2021). quickLD: An efficient software for linkage disequilibrium analyses. , 21(7), 2580-2587, https://doi.org/10.1111/1755-0998.13438.
- Trivizakis, E., Souglakos, I., Karantanas, A., & Marias, K. (2021). Radiogenomics of Non-Small Cell Lung Carcinoma for Assessing Molecular and Histology Subtypes with a Data-Driven Analysis. , Multidisciplinary Digital Publishing Institute , Cancers https://doi.org/10.3390/diagnostics11122383.
- Charalambous, S., Klontzas, M., Kontopodis, N., Ioannou, CV., Perisinakis, K., Maris, Th.G., Damilakis , J., Karantanas, A., & Tsetis, D. (2021). Radiomics and machine learning to predict aggressive type 2 endoleaks after endovascular aneurysm repair: a proof of concept. , Acta Radiol:2841851211032443.
- Bonotis, P., Chytas, A., Zacharioudakis, G., Karamanidou, C., Koumakis, L., Stamatopoulos , K., & Natsiavas , P. (2021). Randomization of Clinical Trial Participants via an Integrated Web Service. , 281, 1124-1125, doi: 10.3233/SHTI210375. PMID: 34042868.
- Korda, A., Giannakakis, G., Ventouras, E., Asvestas, P., Smyrnis, N., Marias, K., & Matsopoulos, G. (2021). Recognition of blinks activity patterns during stress conditions using CNN and Markovian analysis. , 2(1), 55-71, Signals https://doi.org/10.3390/signals2010006.
- Kondylakis, H., Stefanidis, K., & Rao, P. (2021). Report on the Third International Workshop on Semantic Web Meets Health Data Management (SWH 2020). ACM SIGMOD Record, 50-3.
- Skaramagkas, V., Giannakakis, G., Ktistakis , E, Manousos, D., Karatzanis, I., Tachos, N., Tripoliti, E.E., Marias, K., Fotiadis, D.I., & Tsiknakis, M.N. (2021). Review of eye tracking metrics involved in emotional and cognitive processes. , DOI: 10.1109/rbme.2021.3066072 .
- Katehakis, D.G., Kavlentakis, G., Kostomanolakis, S., Logothetidis, F, Petrakis, Y., Stathiakis, N., Tzikoulis , Vassilis, Kondylakis, H., & Kouroubali, A. (2021). Safe in COVID-19: A platform to support effective monitoring of incidents during a pandemic. EAI Endorsed Transactions on Bioengineering and Bioinformatics, 1(2 ), European Union Digital Library e5; bebi 21(2):e5, DOI: 10.4108/eai.12-3-2021.169027.
- Tsiknakis, N, Savvidaki , E., Kafetzopoulos, S., Manikis, G., Vidakis, N., Marias, K., & Alissandrakis, E. (2021). Segmenting 20 Types of Pollen Grains for the Cretan Pollen Dataset v1 (CPD-1). , 11(14), 6657, Applied Sciences https://doi.org/10.3390/app11146657.
- Kompoliti, E., Prodromou, M., & Karantanas, A. (2021). SLAC and SNAC Wrist: The Top Five Things That General Radiologists Need to Know. , 7(4), 488-503, Tomography doi: 10.3390/tomography7040042.
- Karantanas, A., & Maas, M. (2021). Strategy required: “Maintenance of certification for European radiologists”. , 15, Insights Imaging 12 https://doi.org/10.1186/s13244-020-00953-9.
- Papadaki, E., Mastorodemos, V., Panou , T., Pouli, S., Spyridaki, E., Kavroulakis, E., Kalaitzakis, G., Maris, Th.G., & Simos, P.G. (2021). T2 Relaxometry Evidence of Microstructural Changes in Diffusely Abnormal White Matter in Relapsing-Remitting Multiple Sclerosis and Clinically Isolated Syndrome: Impact on Visuomotor Performance. , 54(4), 1077-1087.
- Flouri, M., & Karademas, E, Simos, P.G. (2021). The relationship between dissociation and acute pain: The impact of prior and reactive dissociation. , https://doi.org/10.1007/s12144-021-01798-1.
- Boursianis, T., Kalaitzakis, G., Nikiforaki, K., Kosteletou, E., Antypa, D., Gourzounidis, A., Papadaki, E., Simos, P.G., Maris, Th.G., & Marias, K. (2021). The Significance of Echo Time in fMRI BOLD Contrast: A Clinical Study during Motor and Visual Activation Tasks at 1.5 T. . , 7(3), 333-343, Tomography DOI: 10.3390/tomography7030030.
- Chatzaki, C., Skaramagkas, V., Tachos, N., Christodoulakis, G., Maniadi, E., Kefalopoulou , Z., Fotiadis, D.I., & Tsiknakis, M.N. (2021). The Smart-Insole Dataset: Gait analysis using wearable sensors with a focus on elderly and Parkinson’s patients. , 21(8), 2821, https://doi.org/10.3390/s21082821.
- Vassalou, E.E., Klontzas, M., Plagou, AP., & Karantanas, A. (2021). Ultrasound-guided percutaneous irrigation of calcific tendinopathy: redefining predictors of treatment outcome. , 31(4), 2634-2643, Eur Radiol doi: 10.1007/s00330-020-07334-2.
- Klontzas, M., Koltsakis, E., Kakkos, GA., & Karantanas, A. (2021). Ultrasound-guided treatment of Morton's neuroma. , 21(85), 134-138, DOI: 10.15557/JoU.2021.0022.
- Kalemaki, S.M., Karantanas, A., Exarchos, T., Detorakis , E., Zoras, O., Marias, K., Millo, C., Bagci, U., Pallikaris, I.G., Stratis, A., Karatzanis, I., Perisinakis, K., Koutentakis, P., Kontadakis, G.A., Spandidos, D, Tsatsakis, A, Papadakis Z., & G. (2020). "PET/CT and PET/MRI in ophthalmic oncology (Review),”. , 417-429, International Journal of Oncology doi: 10.3892/ijo.2020.4955.
- Stancioiu, F., Papadakis Z., G., Kteniadakis, S., Izotov, BN., Coleman, MD., & Spandidos, D, Tsatsakis, A (2020). A dissection of SARS‑CoV2 with clinical implications (Review). , 46(2), 489-508.
- Britzolakis, A, Kondylakis, H., & Papadakis, N. (2020). A review on Lexicon-Based and Machine Learning Political Sentiment Analysis using Tweets. , World Scientific Open - Access: Green.
- Goules, A., De Vita, S., Zabotti, A., Delporte, C., Soyfoo, M.S., Barone, F., Fisher, P., Brito-Zerón, P., Bartoloni, E., Mavragan, CP., Fotiadis, D.I., Tzioufas, A., & Tsiknakis, M.N. (2020). A Training Tool to support the management and diagnosis of Sjögren’s syndrome. , 126(4), 174-179, Clinical and Experimental Rheumatology PMID: 33095144.
- Trivizakis, E., Tsiknakis, N, Vassalou, E.E., Papadakis Z., G., Spandidos, D, Sarigiannis, D., Tsatsakis, A, Papanikolaou, N., Karantanas, A., & Marias, K. (2020). Advancing covid-19 differentiation with a robust preprocessing and integration of multi-institutional open-repository computer tomography datasets for deep learning analysis. , 20, no 5, Experimental and Therapeutic Medicine https://doi.org/10.3892/etm.2020.9210.
- Kouroubali, A., Kondylakis, H., Kavlentakis, G., Logothetidis, F, Stathiakis, N., Petrakis, Y., Tzikoulis , Vassilis, Kostomanolakis, S., & Katehakis, D.G. (2020). An eHealth Platform for the Holistic Management of COVID-19. , 273, 182-188, https://doi.org/10.3233/shti200636 Open - Access: Green.
- Taskent, R.O., Lin, Y.L., Patramanis, I., Pavlidis , P., & Gokcumen, O. (2020). Analysis of haplotypic variation and deletion polymorphisms point to multiple archaic introgression events, including from altai neanderthal lineage.. , 215(2), 497-509, Genetics https://doi.org/10.1534/genetics.120.303167.
- Trivizakis, E., Papadakis Z., G., Souglakos, I., Papanikolaou, N., Koumakis, L., Spandidos, D, Tsatsakis, A, Karantanas, A., & Marias, K. (2020). Artificial intelligence radiogenomics for advancing precision and effectiveness in oncologic care. , 57(1), 43-53, International Journal of Oncology doi: 10.3892/ijo.2020.5063.
- Pampouchidou, A., Pediaditis, M., Kazantzaki, E., Sfakianakis, S, Apostolaki, I. A., Argyraki, K., Manousos, D., Meriaudeau, F., Marias, K., Yang, F., Tsiknakis, M.N., & Basta, M, Vgontzas, A. N, Simos, P.G. (2020). Automated facial video-based recognition of depression and anxiety symptom severity: cross-corpus validation. , 31, Machine Vision and Applications.
- Stancioiu, F., Papadakis Z., G., Lazopoulos, G., Spandidos, D, Tsatsakis, A, Floroiu, M., & Badiu, C. (2020). CD271+ stem cell treatment of patients with chronic stroke. , 20(3), 2055-2062.
- Papadakis Z., G., Sadowksi, SM., & Millo, C. (2020). Complementary role of 18F-FDG and 68Ga-DOTATATE PET/CT in the surveillance of patients with von Hippel-Lindau syndrome. , 33(3), 323, Ann Gastroenterol.
- Tirosh, A., RaviPrakash, H., Papadakis Z., G., Tatsi, C., Belyavskaya, E., Charalampos, L., Lodish, MB., Bagci, U., & Stratakis, C. (2020). Computerized Analysis of Brain MRI Parameter Dynamics in Young Patients With Cushing Syndrome-A Case-Control Study. , 105(5), e2069-e2077, doi: 10.1210/clinem/dgz303.
- Spanakis, M., Patelarou , A., Zoumpoulakis, M., Patelarou, E., & Tzanakis, N. (2020). COVID-19 epidemic: Comparison of three European countries with different outcomes using Gompertz function method. , 33(2), 1-6.
- Kondylakis, H., Katehakis, D.G., Kouroubali, A., Logothetidis, F, Triantafyllidis, A, Kalamaras, I, Votis, K., & Tzovaras, D. (2020). COVID-19 Mobile Apps: A Systematic Review of the Literature. , 22, num:12, e23170, https://doi.org/10.2196/23170.
- Kallergi, G., Hoffmann, O, Bittner, A.-K., Papadimitriou, L, Katsarou, S. D. , Zacharopoulou, N., Zervakis, M. , Sfakianakis, S, Stournaras, C. , Georgoulias , V., & Kimmig, R. , Kasimir-Bauer, S (2020). CXCR4 and JUNB double-positive disseminated tumor cells are detected frequently in breast cancer patients at primary diagnosis. , 12, Therapeutic Advances in Medical Oncology.
- Koumakis, L. (2020). Deep learning models in genomics; are we there yet?. , 18, 1466-1473, Computational and Structural Biotechnology Journal https://doi.org/10.1016/j.csbj.2020.06.017.
- Kapopoulou, A., Kapun, M., Pieper, B., Pavlidis , P., Wilches, R., Duchen, P., Stephan, W., & Laurent, S. (2020). Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster. , 10(1), 1-8, https://doi.org/10.1038/s41598-020-79720-1.
- Tu, TW., Kovacs, Z., Sundby, M., Witko, JA., Papadakis Z., G., Reid, WC., Hammoud, D., & Frank, JA. (2020). Diffusion Tensor Imaging and Chemical Exchange Saturation Transfer MRI Evaluation on the Long-Term Effects of Pulsed Focused Ultrasound and Microbubbles Blood Brain Barrier Opening in the Rat. , 14(908), Front Neurosci.
- Kouroubali, A., Kondylakis, H., Koumakis, L., Kavlentakis, G., Banos, A.S., Camarano, R.M., Papagiannakis, G., Zikas, P., Petrakis, Y., Diaz, A.H., Hors-Fraile, S., Marias, K., & Katehakis, D.G. (2020). Digital Health Tools for Perioperative Stress Reduction in Integrated Care. , 16(2), 7-13.
- Karamanidou, C., Natsiavas , P., Koumakis, L., Marias, K., Schera, F., Schäfer, M., Payne, S., & Maramis, C (2020). Electronic Patient-Reported Outcome–Based Interventions for Palliative Cancer Care: A Systematic and Mapping Review. , 4, 647-656, JCO Clinical Cancer Informatics DOI: 10.1200/CCI.20.00015.
- Kontopodis, E., Marias, K., Manikis, G., Nikiforaki, K., Maris, Th.G., Mastorodemos, V., Papadakis Z., G., & Papadaki, E. (2020). Extended perfusion protocol for MS lesion quantification. , 15(1), 520-530, Open Med (Wars) DOI: 10.1515/med-2020-0100.
- Zaganas, I., Mastorodemos, V., Spilioti, M., Mathioudakis, L., Latsoudis, H., Michaelidou, K., Kotzamani, D., Notas, K., Dimitrakopoulos, K., Skoula, I., Ioannidis, S., Klothaki, E., Erimaki, S., Stavropoulos, G., Vassilikos, V., Amoiridis, G., Efthimiadis, G., Evangeliou, A., & Mitsias, P. (2020). Genetic cause of heterogeneous inherited myopathies in a cohort of Greek patients. Molecular Genetics and Metabolism Reports, 25: 100682, DOI: https://doi.org/10.1016/j.ymgmr.2020.100682.
- Pfeifer, B., Alachiotis , N., Pavlidis , P., & Schimek, M.G. (2020). Genome scans for selection and introgression based on k-nearest neighbour techniques. , 20(6), 1597-1609, Molecular Ecology Resources https://doi.org/10.1111/1755-0998.13221.
- Tsiknakis, N, Trivizakis, E., Vassalou, E.E., Papadakis Z., G., Spandidos, D, Tsatsakis, A, Sánchez-Garcı́ , A, López-González, R, Papanikolaou, N., Karantanas, A., & Marias, K. (2020). Interpretable artificial intelligence framework for covid-19 screening on chest x-rays. , Experimental and Therapeutic Medicine https://doi.org/10.3892/etm.2020.8797.
- Kioukis, A., Michalopoulou, V.A., Briers, L., Pirintsos, S., Studholme, D.J., Pavlidis , P., & Sarris, P.F. (2020). Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection. , 21(1), 1-14, BMC Genomics https://doi.org/10.1186/s12864-019-6439-x.
- Ioannidis, G., Nikiforaki, K., Kalaitzakis, G., Karantanas, A., Marias, K., & Maris, Th.G. (2020). Inverse Laplace transform and multiexponential fitting analysis of T2 relaxometry data: a phantom study with aqueous and fat containing samples. , Springer 10.1186/s41747-020-00154-5.
- Papakonstantinou, A., Kondylakis, H., & Marakakis, M. (2020). MediExpert: An Expert System based on Differential Diagnosis focusing on Educational Purposes. EAI Endorsed Trans. e Learn. , 6(19)-e3, EAI https://doi.org/10.1145/3389189.3397980 Open - Access: Green.
- Zoumpoulakis, M., Spanakis, M., Kavvalos, P.E., Rovithi, M., & Tzanakis, N. (2020). Metastatic lung cancer in oral cavity A case report and literature review. , 33(3), 139-142.
- Tzamali, E., Tzedakis, G., & Sakkalis, V. (2020). Modeling How Heterogeneity in Cell Cycle Length Affects Cancer Cell Growth Dynamics in Response to Treatment. , 10, Frontiers in Oncology 10.3389/fonc.2020.01552.
- Stratigi, M., Kondylakis, H., & Stefanidis, K. (2020). Multidimensional Group Recommendations in the Health Domain. Algorithms , 13(3), 54, MDPI https://doi.org/10.3390/a13030054.
- Nikiforaki, K., Ioannidis, G., Lagoudaki, E., Manikis, G., de Bree, E., Karantanas, A., Maris, Th.G., & Marias, K. (2020). Multiexponential T2 relaxometry of benign and malignant adipocytic tumours. , Springer (2509-9280 ), https://doi.org/10.1186/s41747-020-00175-0.
- Klontzas, M., Papadakis Z., G., Marias, K., & Karantanas, A. (2020). Musculoskeletal trauma imaging in the era of novel molecular methods and artificial intelligence. , 51(12), 2748-2756, Injury DOI: 10.1016/j.injury.2020.09.019.
- Spanakis, M., Patelarou , A., & Patelarou, E. (2020). Nursing Personnel in the Era of Personalized Healthcare in Clinical Practice. , 10(3), 56, https://doi.org/10.3390/jpm10030056.
- Pavlidis , P., & Somel, M. (2020). Of dogs and men. , 370(6516), 522-523, Science https://doi.org/10.1126/science.abe7823.
- Mazonakis, M., Papadaki, E., Maris, Th.G., Blazaki, S., Drakonaki, E.E., & Detorakis , E. (2020). Orbital volume measurements from magnetic resonance images using the techniques of manual planimetry and stereology. , 11(1), 20-27, Natl J Maxillofac Surg. doi: 10.4103/njms.NJMS_9_20.
- Kondylakis, H., Bucur, A., Crico, C., Dong, F., Graf, N., Hoffman, S., Koumakis, L., Manenti, A, Marias, K., Mazzocco, K., Pravettoni, G, Renzi, C., Schera, F., Triberti, S, Tsiknakis, M.N., & Kiefer, S. (2020). Patient Empowerment for Cancer Patients through a Novel ICT Infrastructure. Journal of Biomedical Informatics, 101, 1033, Elsevier https://doi.org/10.1016/j.jbi.2019.103342.
- Koumakis, L., Tsiknakis, M.N., Kiefer, S., & Kondylakis, H. (2020). Personally Managed Health Data: Barriers, Approaches and a Roadmap for the Future. Journal of Biomedical Informatics (JBI), 106, 103-440, Elsevier https://doi.org/10.1016/j.jbi.2020.103440.
- Koutentaki, E, Basta, M, Simos, P.G., Koutra , K., Stefanakis, Z., & Vgontzas, A. N (2020). Physical and mental health burden of caregivers of patients with psychiatric disorders. , 293, Psychiatry Research 113431.
- Shekhar, S., Sinaii, N., Irizarry-Caro , JA., Gahl, W. A., Estrada-Veras, J. I., Dave, R., Papadakis Z., G., Tirosh, A., Abel, BS., Klubo-Gwiezdzinska , J., Skarulis, MC., Gochuico, BR., & Hannah-Shmouni, F. (2020). Prevalence of Hypothyroidism in Patients With Erdheim-Chester Disease. , 3(10), e2019169.
- Simos, N. J., Dimitriadis, S., Kavroulakis, E., Manikis, G., Bertsias, G., Simos, P.G., Maris, Th.G., & Papadaki, E. (2020). Quantitative Identification of Functional Connectivity Disturbances in Neuropsychiatric Lupus Based on Resting-State fMRI: A Robust Machine Learning Approach. , 10(11), Brain Sciences https://doi.org/10.3390/brainsci10110777.
- Kondylakis, H., & Papadakis, A, Tsirigotakis, D, Fragkiadakis, G, Panteri, E, Fragkakis, A, Tzagkarakis, E, Rallis, I, Saridakis, Z, Trampas, A, Pirounakis, G, Papadakis, N. (2020). R2D2: A DBpedia Chatbot. , 13(9), 217, Mdpi https://doi.org/10.3390/a13090217 Open - Access: Green.
- Kondylakis, H., Stefanidis, K., Rao, P., & Parry, D. (2020). Report on the Second International Workshop on Semantic Web Meets Health Data Management (SWH 2019). , 49(2), 59-62, https://doi.org/10.1145/3442322.3442333.
- Zibis, A., Banios, K., Mitrousias, D.V., Karantanas, A., Markou, A.S., Mangiavini, L., & Luceri, F. (2020). Restoration of the degenerated cervical intervertebral space: how much should we distract? . , 34(4145), 152, J Biol Regul Homeost.
- Genitsaridi , I., Flouri, I., Plexousakis, D., Marias, K., Boki , K., Skopouli , F., Drosos , A., Bertsias, G., Boumpas, D., & Sidiropoulos, P. (2020). Rheumatoid Arthritis Patients on Persistent Moderate Disease Activity on Biologics have Adverse 5-year Outcome Compared to Persistent Low-Remission Status and Represent a Heterogeneous Group. Arthritis Research and Therapy, 22.
- Irmakci, I., Drew, A., Torigian, D.A., Jambawalikar, S., Papadakis Z., G., Akgun, C., Akcakaya, M., & Bagci, U. (2020). Semi-Supervised Deep Learning for Multi-TissueSegmentation from Multi-Contrast MRI. , 24, 1-14, Journal of Signal Processing Systems https://doi.org/10.1007/s11265-020-01612-4.
- Kouroubali, A., Koumakis, L., Kondylakis, H., & Katehakis, D.G. (2020). Smart Healthcare Apps for Quality Cancer Patient Support. International Journal of Big Data and Analytics in Healthcare (IJBDAH), 5(1), 28-48, IGI Global DOI: 10.4018/IJBDAH.2020010103 S2CID: 219001307.
- Kondylakis, H., Axenie, C, Bastola, D (K), Katehakis, D.G., Kouroubali, A., Kurz, D, Larburu, N, Macía, I, Maguire, R, Maramis, C, Marias, K., Morrow, P, Muro, N, Núñez-Benjumea, F.J., Rampun, A, Rivera-Romero, O, Scotney, B, Signorelli, G, Wang, H., Tsiknakis, M.N., & Zwiggelaar, R (2020). Status and Recommendations of Technological and Data-Driven Innovations in Cancer Care: Focus Group Study. , 22, num:12, e22034, https://doi.org/10.2196/22034 Open - Access: Green.
- Hartley, I.R., Miller, C.B., Papadakis Z., G., Bergwitz, C., Del, R., Blau, JE., Florenzano, P., Berglund, JA., Tassone, J., Roszko, KL., Moran, S., Gafni, R.I., Isaacs, R., Collins T., & M. (2020). Targeted FGFR Blockade for the Treatment of Tumor-Induced Osteomalacia. , 383(14), 1387-1389.
- Papadakis Z., G., Kochiadakis, G., Lazopoulos, G., Marias, K., Klapsinos, N., Hannah-Shmouni, F., Igoumenaki, G., Nikolouzakis, T.K., Kteniadakis, S., & Spandidos, D, Karantanas, A. (2020). Targeting vulnerable atherosclerotic plaque via PET‑tracers aiming at cell‑surface overexpression of somatostatin receptors. , 13(9), Biomedical Reports, Reports http://doi.org/10.3892/br.2020.1316.
- Klontzas, M., Vassalou, E.E., Zibis, A., & Karantanas, A. (2020). The effect of injection volume on long-term outcomes of US-guided subacromial bursa injections. , Eur J Radiol DOI: 10.1016/j.ejrad.2020.109113.
- Grigoriou, M., Banos, A., Filia, A., Pavlidis , P., Giannouli, S., Karali, V., Nikolopoulos, D., Pieta, A., Bertsias, G., Verginis, P., Mitroulis, I., & Boumpas, D. (2020). Transcriptome reprogramming and myeloid skewing in haematopoietic stem and progenitor cells in systemic lupus erythematosus. , 79(2), 242-253, Ann Rheum Dis. DOI: 10.1136/annrheumdis-2019-215782.
- Chatziadam, P., Dimitriadis, A, Gikas, S, Logothetis, I, Michalodimitrakis, M, Neratzoulakis, M, Papadakis, A, Kontoulis, V, Siganos, N, Theodoropoulos, D., Vougioukalos, G, Hatzakis, I, Gerakis, G, Papadakis, N., & Kondylakis, H. (2020). TwiFly: A Data Analysis Framework for Twitter. , 11(5), 247, MDPI https://doi.org/10.3390/info11050247.
- Wurth, R., Tirosh, A., Kamilaris, CDC, Camacho, J., Faucz, FR, Maria, AG., Berthon, M., Papadakis Z., G., Nilubol, N., Hamimi, A., Gharib, AM., Demidowich, A., Zilbermint, M., Eisenhofer , G., Braun, L., Reincke, M., Stratakis, C., & Hannah-Shmouni, F. (2020). Volumetric Modeling of Adrenal Gland Size in Primary Bilateral Macronodular Adrenocortical Hyperplasia. , 5(1), bvaa162.
- Spanakis, M., Sfakianakis, S.G., kallergis, G., Spanakis, E.G., & Sakkalis, V. (2019). PharmActa: Personalized pharmaceutical care eHealth platform for patients and pharmacists . Journal of Biomedical Informatics, 100.
- Spanakis, M., Sfakianakis, S.G., Sakkalis, V., & Spanakis, E.G. (2019). PharmActa: Empowering Patients to Avoid Clinical Significant Drug–Herb Interactions. Medicines - Journal of evidence-based classical, complementary and integrative medicine, Special Issue "Safety of Complementary Medicines", 6(1), MDPI.
- Oraiopoulou, M.E., Tampakaki, M, Tzamali, E., Tamiolakis , T, Vakis, A., Zacharakis, G., Sakkalis, V., & Papamatheakis, J. (2019). “A 3D tumor spheroid model for the T98G Glioblastoma cell line phenotypic characterization”,. , https://www.sciencedirect.com/science/article/pii/S0040816618304166.
- Papadakis Z., G., Manikis, G., Karantanas, A., Florenzano, P., Bagci, U., Marias, K., Collins T., M., Boyce M., & A. (2019). 18 F-NaF PET/CT IMAGING IN FIBROUS DYSPLASIA OF BONE. , 34(9), 1619-1631, J Bone Miner Res https://doi.org/10.1002/jbmr.3738.
- Katehakis, D.G., & Kouroubali, A. (2019). A Framework for eHealth Interoperability Management. Journal of Strategic Innovation and Sustainability, 14(5), 51-61, DOI: 10.33423/jsis.v14i5.2521, S2CID: 211529395.
- Tzamali, E., Tzedakis, G., & Sakkalis, V. (2019). A framework linking glycolytic metabolic capabilities and tumor dynamics. IEEE Journal of Biomedical and Health Informatics, (2168-2194/2168-2208/https://doi.org/10.1109/JBHI.2018.2890708), doi: 10.1109/JBHI.2018.2890708.
- Trivizakis, E., Ioannidis, G., Melissianos, V, Papadakis Z., G., & Tsatsakis, A, Spandidos, D, Marias, K. (2019). A novel deep learning architecture outperforming ‘off‑the‑shelf’ transfer learning and feature‑based methods in the automated assessment of mammographic breast density. , 2009-2015, Spandidos Publications https://doi.org/10.3892/or.2019.7312, Oncology Reports.
- Shekhar, S., Gubbi, S., Papadakis Z., G., Nilubol, N., & Hannah-Shmouni, F. (2019). Adrenocortical carcinoma and pulmonary embolism from tumoral extension. , Endocrinol Diabetes Metab Case Rep doi: 10.1530/EDM-19-0095.
- Kavroulakis, E., Kalaitzakis, G., Karageorgou, D., Makrakis, D, Maris, Th.G., & Simos, P.G. (2019). Age-related deep white matter changes in myelin and water content: a T2 relaxometry study. , 50, 1393-1404, Journal of Magnetic Resonance Imaging DOI:10.1002/jmri.26707.
- Kouroubali, A., Notas, G. , Rivero-Rodriguez, A., Sidiropoulos, P., Simos, P.G., Katehakis, D.G., Kondylakis, H., & Hors-Fraile, S. (2019). An Innovative, Information and Communication Technology Supported Approach, Towards Effective Chronic Pain Management. International Journal of Reliable and Quality E-Healthcare (IJRQEH), 8(1), 23-39, IGI Global (10.4018/IJRQEH.2019010103), http://users.ics.forth.gr/~katehaki/publications/ijrqeh2019.pdf.
- Farmaki, C., Sakkalis, V., Loesche, F., & Nisiforou, EA (2019). Assessing Field Dependence–Independence Cognitive Abilities Through EEG-Based Bistable Perception Processing. , 13(345), Hum. Neurosci https://doi.org/10.3389/fnhum.2019.00345.
- Basta, M, Simos, P.G., Vgontzas, A. N, Koutentaki, E, Tziraki, S., Zaganas, I., Panagiotakis , S., Kapetanaki, S., Fountoulakis, N., & Lionis, C. (2019). Associations between sleep duration and cognitive impairment in MCI. , Journal of Sleep Research DOI: 10.1111/jsr.12864.
- Papadaki, E., Vakis, A., Chlouverakis, G., Makrakis, D, Karageorgou, D., Simos, P.G., & Koukouraki, S. (2019). Brain SPECT and perfusion MRI: do they provide complementary information about the tumour lesion and its grading?. , 74(8), 652-e1-652, Clin Radiol doi: 10.1016/j.crad.2019.03.025.
- Moreira, J.M., Santiago, I., Santinha, J., Figueiredo, N., Marias, K., Figueiredo, M., Vanneschi, L., & Papanikolaou, N. (2019). Challenges and Promises of Radiomics for Rectal Cancer. , 15(6), 175-180, Current Colorectal Cancer Reports doi:10.1007/s11888-019-00446-y.
- Kondylakis, H., Dayan, N., Zoumpatianos, K., & Palpanas, T. (2019). Coconut: Sortable Summarizations for Scalable Indexes over Static and Streaming Data Series. The VLDB Journal, 28, 847-869, The VLDB Journal volume 28: Springer https://doi.org/10.1007/s00778-019-00573-w Open Access: Green.
- Alachiotis , N., Pavlidis , P., Goungoulou, A., Kpeki, S.B., Zhao, D., & Semagn, K. (2019). Comparisons of molecular diversity indices , selective sweeps and population structure of African rice with its wild progenitor and Asian rice. , 132(4), 1145-1158, Theor. Appl. Genet DOI: 10.1007/s00122-018-3268-2.
- van den Berg, M., Rashid, A., Ntailiani, K., Karantanas, A., Kuijpers, T., Maas, M., & Schonenberg-Meinema, D. (2019). Consider the wrist: a retrospective study on pediatric connective tissue disease with MRI.. , 39(12), 2095-2101, Rheumatology International DOI: 10.1007/s00296-019-04353-1.
- Klontzas, M., & Karantanas, A. (2019). Considerations on the Use of Ferumoxytol-enhanced MRI for Tracking Stem Cell Implants in Cartilage Defects. , 294(1), 238-239, Radiology https://doi.org/10.1148/radiol.2019192103.
- Karantanas, A., Tsiknakis, M.N., & Tsatsakis, A, Spandidos, D, Marias, K. (2019). Deep learning opens new horizons in personalized medicine. , 10(4), 215-217, Biomedical Reports DOI: 10.3892/br.2019.1199.
- Chatzaki, C, Kazantzaki, E., Maniadi, E., & Tsiknakis, M.N. (2019). Dementia Care Frameworks and Assistive Technologies for Their Implementation: A Review. , 12(4), 18, IEEE Reviews in Biomedical Engineering DOI: 10.1109/RBME.2019.2892614.
- Giannoulis, M., Kondylakis, H., & Marakakis, M. (2019). Designing and implementing a collaborative health knowledge system. Expert Systems with Applications, 126, 277-294, Elsevier https://doi.org/10.1016/j.eswa.2019.02.010.
- Kouroubali, A., Kondylakis, H., Karadimas, E., Kavlentakis, G., Simos, A., Baños, R.M., Camarano, R.H., Papagiannakis, G., Zikas, P., Petrakis, Y., Díaz, A.J., Hors-Fraile, S., Marias, K., & Katehakis, D.G. (2019). Digital Health Tools for Preoperative Stress Reduction in Integrated Care. European Journal of Biomedical Informatics, 16(2), 7-13, Open Access Article, published online: 21 November 2019.
- Fratzl-Zelman, N., Roschger, P., Papadakis Z., G., Cowen, EW., Kang, H., Lehky, TJ., Alter, K., Deng, Z., Ivovic, A., Flynn, L., Reynolds, JC., Dasgupta, A., Miettinen, M., Lange, E., Katz, J., Klaushofer, K., Marini, JC., Siegel, RM., & Bhattacharyya, T. (2019). Distinct Clinical and Pathological Features of Melorheostosis Associated With Somatic MAP2K1 Mutations. , 34(1), 145-156, J Bone Miner Res doi: 10.1002/jbmr.3577.
- Chatzimina, M.E., Koumakis, L., Marias, K., & Tsiknakis, M.N. (2019). Employing Conversational Agents in Palliative Care: A Feasibility Study and Preliminary Assessment. , Ieee 10.1109/BIBE.2019.00095.
- Nikiforaki, K., Manikis, G., & Trivizakis, E. (2019). Extending 2-D Convolutional Neural Networks to 3-D for Advancing Deep Learning Cancer Classification with Application to MRI Liver Tumor Differentiation. , 23, 923-930, IEEE International Conference on Biomedical and Health Informatics , 2019 https://doi.org/10.1109/JBHI.2018.2886276.
- Triantafyllidis, A, Kondylakis, H., Votis, K., Tzovaras, D., Maglaveras, N., & Rahimif, K (2019). Features, Outcomes, and Challenges in Mobile Health Interventions for Patients Living with Chronic Diseases: A Review of Systematic Reviews. International journal of medical informatics, 132, Elsevier https://doi.org/10.1016/j.ijmedinf.2019.103984.
- Tsiknakis, M.N., & Vorgia, P. (2019). Focal epileptic seizures anticipation based on patterns of heart rate variability parameters. . , 123-133, Computer Methods and Programs in Biomedicine 178 https://doi.org/10.1016/j.cmpb.2019.05.032.
- Maris, Th.G., Kontopodis, N., Ioannou, CV., Kehagias, E., Matthaiou, N., Papadakis, A, Hatzidakis, A., Perisinakis, K., & Tsetis, D. (2019). Foot Perfusion Examination for Evaluation of Percutaneous Transluminal Angioplasty Outcome in Patients with Critical Limb Ischemia: A Feasibility Study. , 30(4), 550-568, J Vasc Interv Radiol doi: 10.1016/j.jvir.2018.10.018.
- Kozana, A., & Papadaki, E. (2019). Gadolinium deposition in the brain: current knowledge and recommendations. , Hellenic Journal οf Radiology.
- Sinharay, S., TW, T., Kovacs, Z., Schreiber-Stainthorp , W., Sundby, M., Zhang, X., Papadakis Z., G., Reid, WC., Frank, JA., & Hammoud, D. (2019). In vivo imaging of sterile microglial activation in rat brain after disrupting the blood-brain barrier with pulsed focused ultrasound: [18F]DPA-714 PET study. , 16(1), 155, J Neuroinflammation. DOI: 10.1186/s12974-019-1543-z.
- Boulougoura, A., Papadakis Z., G., Wang, J., Dodd, LE., Rupert, A., Higgins, J., Roby, G., Metzger, D., Laidlaw, E., Mican, JM., Pau, A., Lage, S., Wong, CS., Lisco, A., Manion, M., Sheikh, V., Millo, C., & Sereti, I. (2019). Increased Metabolic Activity on 18F-Fluorodeoxyglucose Positron Emission Tomography- Computed Tomography in Human Immunodeficiency Virus-Associated Immune Reconstitution Inflammatory Syndrome. , 7(68), 229-238, Clin Infect Dis DOI: 10.1093/cid/ciy454.
- Pajic, P., Pavlidis , P., Dean, K., Neznanova, L., Romano, R.A., Garneau, D., Daugherity , E., Globig, A., Ruhl, S., & Gokcumen, O. (2019). Independent amylase gene copy number bursts correlate with dietary preferences in mammals. , 1-22, Elife https://doi.org/10.7554/eLife.44628.001.
- Kontopodis, E., Venianaki, M., Manikis, G., Nikiforaki, K., Salvetti, O., Papadaki, E., Papadakis, G., Karantanas, A., & Marias, K. (2019). Investigating the role of model-based and model-free imaging biomarkers as early predictors of neoadjuvant breast cancer therapy outcome. IEEE J Biomed Health Inform, IEEE (https://www.ncbi.nlm.nih.gov/pubmed/30716054), doi: 10.1109/JBHI.2019.2895459.
- Kouroubali, A., Kondylakis, H., Koumakis, L., Papagiannakis, G., Zikas, P., & Katehakis, D.G. (2019). iSupport: Building a Resilience Support Tool for Improving the Health Condition of the Patient During the Care Path. Studies in Health Technology and Informatics, 253-258, IOS Press https://doi.org/10.3233/978-1-61499-975-1-253.
- Mathioudakis, C., Kampanis, N.A., Tsiknakis, M.N., & Marias, K. (2019). Machine-learning regression in evolutionary algorithms and image registration. , 13(5), 843-849, IET Image Processing DOI:10.1049/iet-ipr.2018.5389.
- Kalyvianaki, K., Panagiotopoulos, A., Malamos, P., Moustou, E., Tzardi, M., Stathopoulos, E., Ioannidis, G., Marias, K., Notas, G. , Theodoropoulos, D., Castanas, E., & Kampa, M. (2019). Membrane androgen receptors (OXER1, GPRC6A AND ZIP9) in prostate and breast cancer: A comparative study of their expression. Steroids, Elsevier (0039-128X/ 1878-5867/https://doi.org/10.1016/j.steroids.2019.01.006), doi: 10.1016/j.steroids.2019.01.006.
- Kalaitzakis, G., Papadaki, E., Kavroulakis, L., Boursianis, T., Marias, K., & Maris, Th.G. (2019). Optimising T2 relaxation measurements on MS patients utilising a multi-component tissue mimicking phantom and different fitting algorithms in T2 alculations. , 4(2), 18-31, Hell J Radiol.
- Spanakis, M., Sfakianakis, S, Sakkalis, V., & Spanakis, E.G. (2019). PharmActa: Empowering Patients to Avoid Clinical Significant Drug–Herb Interactions. , 6(1), 26.
- Spanakis, M., Sfakianakis, S, kallergis, G., Spanakis, E.G., & Sakkalis, V. (2019). PharmActa: Personalized pharmaceutical care eHealth platform for patients and pharmacists. , 100(1).
- Tsakogiannis, A, Pavlidis , P., Tsigenopoulos, C.S., & Manousaki, T (2019). Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling. , 2(1), Communications Biology https://doi.org/10.1038/s42003-019-0654-5.
- Bontzos, G., Papadaki, E., Mazonakis, M., Maris, Th.G., Kapsala, Z., Blazaki, S., Drakonaki, E.E., & Detorakis , E. (2019). Quantification of effective orbital volume and its association with axial length of the eye. A 3D-MRI study. , 63(4), 360-366, Rom J Ophthalmol. PMCID: PMC6943286.
- Bertsias, G., Fanouriakis, A., Karageorgou, D., Sidiropoulos, P., Papastefanakis , E., Boumpas, D., & Simos, P. (2019). Regional cerebral perfusion correlates with anxiety in neuropsychiatric SLE: Evidence for a primary mechanism distinct from depression. , 28, 1678-1689, Lupus DOI: 10.1177/0961203319887793.
- Kondylakis, H., Stefanidis, K., & Rao, P. (2019). Report on the First International Workshop on Semantic Web Technologies for Health Data Management (SWH 2018). SIGMOD Record, 48(3), 41-44, ACM SIGMOD Record: ACM https://doi.org/10.1145/3377391.3377401 Open Access: Green.
- Grigoriadis, D., Giannakaki, K., Simantiraki, O., Roniotis, A., & Tsiknakis, M.N. (2019). Review on psychological stress detection using biosignals. , Transactions on Affective Computing.
- Kyriakis, D, Kanterakis, A., Manousaki, T, Tsakogiannis, A, Tsagris, M, Tsamardinos, I., Papaharisis, L, Chatziplis, D, Potamias, G.A., & Tsigenopoulos, C.S. (2019). Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing. , 10, 675, Frontiers 10.3389/fgene.2019.00675 .
- Klontzas, M., Tsifountoudis, I.P., Spanakis, C., & Karantanas, A. (2019). Spectrum of skeletal disorders during the peripartum period: MRI patterns. , 25(3), 245-250, Diagnost Interv Radiol doi: 10.5152/dir.2019.18354.
- Ioannidis, G., Nikiforaki, K., & Karantanas, A. (2019). Statistical and spatial correlation between diffusion and perfusion MR imaging parameters: A study on soft tissue sarcomas . , 59-66, Elsevier https://doi.org/10.1016/J.EJMP.2019.08.007.
- Nikiforaki, K., Manikis, G., Kontopodis, E., Lagoudaki, E., de Bree, E., Marias, K., Karantanas, A., & Maris, Th.G. (2019). T2, T2 * and spin coupling ratio as biomarkers for the study of lipomatous tumors. , 76-82, Elsevier Inc. https://doi.org/10.1016/j.ejmp.2019.03.023.
- Kouroubali, A., & Katehakis, D.G. (2019). The New European Interoperability Framework as a Facilitator of Digital Transformation for Citizen Empowerment. Journal of Biomedical Informatics, 94, 31-32, DOI: 10.1016/j.jbi.2019.103166, PMID: 30978512, S2CID: 111390503.
- Kallergi, G., Tsintari, V., Sfakianakis, S, Bei, E. S., Lagoudaki, E., Koutsopoulos, A. , Zacharopoulou, N., Alkahtani, S., & Alarifi, S. , Stournaras, C. , Zervakis, M. , Georgoulias , V. (2019). The prognostic value of JUNB-positive CTCs in metastatic breast cancer: from bioinformatics to phenotypic characterization. , 21(1).
- Stancioiu, F., Mihai, D., Papadakis Z., G., & Tsatsakis, A, Spandidos, D, Badiu, C. (2019). Treatment for benign thyroid nodules with a combination of natural extracts. , 20(3), 2332-2338, Mol Med Rep doi: 10.3892/mmr.2019.10453.
- Simos, P.G., Fletcher , J.M., & Papanikolaou, A.C. (2019). Typical and Aberrant Functional Brain Flexibility: Lifespan Development and Aberrant Organization in Traumatic Brain Injury and Dyslexia. , 9(12), 380, Brain Sciences doi: 10.3390/brainsci9120380.
- Ioannidis, G., Marias, K., Galanakis, N., Perisinakis, K., Hatzidakis, A., Tsetis, D., Karantanas, A., & Maris, Th.G. (2018). A correlative study between diffusion and perfusion MR imaging parameters on peripheral arterial disease data. Magnetic Resonance Imaging, 55, 26-35, Elsevier (0730-725X/ 1873-5894 / https://doi.org/10.1016/j.mri.2018.08.006), doi: 10.1016/j.mri.2018.08.006.
- Dimitriadis, S., Simos, P.G., Fletcher , J.M., & Papanikolaou, A.C. (2018). Aberrant resting-state functional brain networks in dyslexia: Symbolic mutual information analysis of neuromagnetic signals. , Int J Psychophysiol DOI: 10.1016/j.ijpsycho.2018.02.008.
- Basta, M, Vgontzas, A. N, Simos, P.G., Koutentaki, E, Bertsias, A, Lionis, C., Duyker, G., & Zaganas, I. (2018). Association between insomnia symptoms and cognitive impairment in the Cretan Aging Cohort. , 697-706, DOI: 10.1007/s41999-018-0086-7.
- Triviai, I.N. , Zeschke, S., Rentel, J., Spanakis, M., Scherer , T., Gabdoulline, R., Panagiota , V., Thol, F., Heuser , M., Stocking, C., & Kröger , N. (2018). ASXL1/EZH2 mutations promote clonal expansion of neoplastic HSC and impair erythropoiesis in PMF.. Leukemia, Springer Nature ( 0887-6924 / 1476-5551 / https://www.nature.com/leu/ ), doi: 10.1038/s41375-018-0159-0.
- Kondylakis, H., Dayan, N., Zoumpatianos, K., & Palpanas, T. (2018). Coconut: A Scalable Bottom-Up Approach for Building Data Series Indexes. Proceedings of the VLDB Endowment, 11(6), 677-690, ACM doi: 10.14778/3184470.3184472.
- Kourou, K, Pezoulas , E., Georga, E., Exarchos, T., Tsanakas, P., Tsiknakis, M.N., Varvarigou , Th., De Vita, S., Tzioufas, A., & Fotiadis, D.I. (2018). Cohort Harmonization and Integrative Analysis From a Biomedical Engineering Perspective. , 12, 303-318, IEEE Reviews in Biomedical Engineering DOI: 10.1109/RBME.2018.2855055.
- Kondylakis, H., Kouroubali, A., Koumakis, L., Rivero-Rodriguez, A., Hors-Fraile, S., & Katehakis, D.G. (2018). Designing a Novel, Technical Infrastructure for Chronic Pain Self-Management. Studies in Health Technology and Informatics, 249, 203-207, IOS Press doi: 10.3233/978-1-61499-868-6-203.
- Faccio, F., Renzi, C., Crico, C., Kazantzaki, E., Kondylakis, H., Koumakis, L., Marias, K., & Pravettoni, G (2018). Development of an eHealth tool for cancer patients: monitoring psychoemotional aspects with the family resilience (FaRe) questionnaire. ecancer, 12(852), (https://ecancer.org/journal/12/852-development-of-an-ehealth-tool-for-cancer-patients-monitoring-psychoemotional-aspects-with-the-family-resilience-fare-questionnaire.php), doi: https://doi.org/10.3332/ecancer.2018.852.
- Katehakis, D.G. (2018). Electronic Medical Record Implementation Challenges for the National Health System in Greece. International Journal of Reliable and Quality E-Healthcare (IJRQEH), 7(1), 16-30, (10.4018/IJRQEH.2018010102).
- Holub, P., Kohlmayer, F., Prasser, F., Mayrhofer, M., Schlünder, I., Martin, G., Casati, S., Koumakis, L., Wutte, A., Kozera, L., Strapagiel, D., Anton, G., Zanetti, G., Sezerman, O., Mendy, M., Valik, D., Lavitrano, M., Dagher, G., Zatloukal, K., Ommen, G., & Litton, J. (2018). Enhancing Reuse of Data and Biological Material in Medical Research: From FAIR to FAIR-Health. Biopreservation and biobanking , 16(2), 97-105, Mary Ann Liebert, Inc., publishers doi: https://doi.org/10.1089/bio.2017.0110.
- Kondylakis, H., & Papadakis, N. (2018). EvoRDF: Evolving the Exploration of Ontology Evolution. Knowledge Engineering Review, Cambridge University Press.
- Schera, F., Schäfer, M., Bacur, A., van Leeuwen, J, Ngantchjon, E., Graf, N., Kondylakis, H., Koumakis, L., Marias, K., & Kiefer, S. (2018). iManageMyHealth and iSupportMyPatients: mobile decision support and health management apps for cancer patients and their doctors. , 12(848), (https://ecancer.org/journal/12/full/848-imanagemyhealth-and-isupportmypatients-mobile-decision-support-and-health-management-apps-for-cancer-patients-and-their-doctors.php), doi: https://doi.org/10.3332/ecancer.2018.848.
- Nikolouzakis, T.K., Vassilopoulou, L., Fragkiadaki, P., Sapsakos, M., Papadakis Z., G., & Spandidos, D, Tsatsakis, A, Tsiaousis, J. (2018). Improving diagnosis, prognosis and prediction by using biomarkers in CRC patients (Review). , 39(6), 2455-2472, Oncology Reports https://doi.org/10.3892/or.2018.6330.
- Oraiopoulou, M.E., Tzamali, E., Tzedakis, G., Liapis, E., Zacharakis, G., Vakis, A., Papamatheakis, J., & Sakkalis, V. (2018). Integrating in vitro experiments with in silico approaches for Glioblastoma invasion : the role of cell-to-cell adhesion heterogeneity. Scientific Reports, 8, 1-17, Springer US (https://doi.org/10.1038/s41598-018-34521-5), doi: 10.1038/s41598-018-34521-5.
- Oraiopoulou, M.E., Tzamali, E., Tzedakis, G., Liapis, E., Zacharakis, G., Vakis, A., Papamatheakis, J., & Sakkalis, V. (2018). Integrating in vitro experiments with in silico approaches for Glioblastoma invasion: the role of cell-to-cell adhesion heterogeneity”. , 8(1), 16200, Nature Scientific Reports https://www.nature.com/articles/s41598-018-34521-5 .
- Ioannidis, G., Maris, Th.G., Nikiforaki, K., Karantanas, A., & Marias, K. (2018). Investigating the correlation of Ktrans with semi-quantitative MRI parameters towards more robust and reproducible perfusion imaging biomarkers in three cancer types.. , 23(5), 1855-1862, IEEE (2168-2194/ 2168-2208/ https://doi.org/10.1109/JBHI.2018.2888979), doi: 10.1109/JBHI.2018.2888979.
- Crico, C., Renzi, C., Graf, N., Buyx, A., Kondylakis, H., Koumakis, L., & Pravettoni, G (2018). mHealth and telemedicine apps: in search of a common regulation. ecancer, 12(853), (https://ecancer.org/journal/12/853-mhealth-and-telemedicine-apps-in-search-of-a-common-regulation.php), doi: https://doi.org/10.3332/ecancer.2018.853.
- Fanouriakis, A., Kavroulakis, L., Karageorgou, D., Sidiropoulos, P., Bertsias, G., Simos, P.G., & Boumpas, D. (2018). Neuropsychiatric lupus or not? Cerebral hypoperfusion by perfusion-weighted MRI in normal appearing white matter in primary neuropsychiatric lupus erythematosus. , Annals of Rheumatic Diseases DOI: 10.1136/annrheumdis-2017-212285.
- Papadaki, E., Fanouriakis, A., Kavroulakis, L., Karageorgou, D., Sidiropoulos, P., Bertsias, G., Simos, P.G., & Boumpas, D. (2018). Neuropsychiatric lupus or not? Cerebral hypoperfusion by perfusion-weighted MRI in normal appearing white matter in primary neuropsychiatric lupus erythematosus.. Annals of Rheumatology, 77, 441-448.
- Kanterakis, A., Karacapilidis, N., Koumakis, L., & Potamias, G.A. (2018). On the development of an open and collaborative bioinformatics research environment. , 126, 1062-1071, Elsevier Inc. 10.1016/j.procs.2018.08.043.
- Iatraki, G., Kondylakis, H., Koumakis, L., Chatzimina, M., Marias, K., & Tsiknakis, M.N. (2018). Personal health information recommender: implementing a tool for the empowerment of cancer patients. ecancer, 12(852), (https://ecancer.org/journal/12/852-development-of-an-ehealth-tool-for-cancer-patients-monitoring-psychoemotional-aspects-with-the-family-resilience-fare-questionnaire.php), doi: https://doi.org/10.3332/ecancer.2018.852.
- Manikis, G., Spanakis, M., & Spanakis, E.G. (2018). Personalized Mobile eHealth Services for Secure User Access Through a Multi Feature Biometric Framework. International Journal of Reliable and Quality E-Healthcare (IJRQEH), 8(1), 40-51, IGI Global.
- Tirosh, A., Papadakis Z., G., Millo, C., Hammoud, D., Sadowski, SM., Herscovitch, P., Pacak, K., Marx, SJ, Yang, L., Nockel, P., Shell, J., Green, P., Keutgen, XM, Patel, D., Nilubol, N., & Kebebew, E. (2018). Prognostic Utility of Total 68Ga-DOTATATE-Avid Tumor Volume in Patients With Neuroendocrine Tumors. , 998-1008, Gastroenterology DOI: 10.1053/j.gastro.2017.11.008.
- Alachiotis , N., & Pavlidis , P. (2018). RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors. , Communications Biology https://doi.org/10.1038/s42003-018-0085-8.
- Ntaios, G., Papavasileiou, V., Psychogios, K., Psychogios, M., Mpotsaris, A., Rizos, T., Spengos, K., Gravanis, M., Vassilopoulou, S., Gkogkas, C., Zampaki, P., Zis , P., Karantanas, A., Karygiannis, M., Karydas, G., Makaritsis, K., Marmagkiolis, K., Milionis , H., Mitsikostas, D., Nikas, N., Plomaritoglou, A., Politi, M.., Ptochis, N., Savopoulos, C., Takis, K., Tsamopoulos, N.|, Tsetis, D., Hatzidakis, A., & Chatziioannou, A. (2018). Recommendations for mechanical thrombectomy in patients with acute ischemic stroke: A clinical guide by the Hellenic Stroke Organization. , 28, 145-51, Clin Neuroradiol DOI: 10.1007/s00062-017-0645-1.
- Simos, P.G., Zaganas, I., Basta, M, Perysinaki, G.S., Fountoulakis, N., Giaka, M., Kapetanaki, I., Bertsias, A, Duijker, G., Scarmeas, N., Tziraki, S., Lionis, C., & Vgontzas, A. N (2018). Self-reported fatigue as a risk index for dementia diagnosis. , 211-217, European Geriatric Medicine DOI: 10.1007/s41999-017-0020-4.
- Kokinou, E., & Panagiotakis, C. (2018). Structural pattern recognition applied on bathymetric data from the Eratosthenes Seamount (Eastern Mediterranean, Levantine Basin) . Geo-Marine Letters, Springer, 1-14, Springer-Verlag GmbH Germany, part of Springer Nature 2018 (1432-1157), doi: https://doi.org/10.1007/s00367-018-0553-7.
- Cebiric, S., Goasdoue, F., Kondylakis, H., Kotzinos, D., Manolescu, I., Troullinou, G., & Zneika, M. (2018). Summarizing Semantic Graphs: A Survey. The VLDB Journal, 1-35, Springer (https://link.springer.com/article/10.1007/s00778-018-0528-3), https://doi.org/10.1007/s00778-018-0528-3.
- Lagoudaki, E., Manikis, G., Kontopodis, E., Marias, K., Bree, E, Maris, Th.G., & Karantanas, A. (2018). T2 and T2* relaxometry of benign and malignant lipomatous tumors. , European Journal of Medical Physics https://doi.org/10.1016/j.ejmp.2018.06.094.
- Papadakis Z., G., Millo, C., Jassel, IS., Bagci, U., Sadowski, SM., Karantanas, A., & Patronas, NJ. (2017). 18F-FDG and 68Ga-DOTATATE PET/CT in von Hippel-Lindau Disease-Associated Retinal Hemangioblastoma. Clin Nucl Med, 42(3), 189-190, doi: 10.1097/RLU.0000000000001511 PMID:28033220 .
- Papadakis Z., G., Jha, S., Bhattacharyya, T., Millo, C., Tu, TW., Bagci, U., Marias, K., Karantanas, A., & Patronas, NJ. (2017). 18F-NaF PET/CT in Extensive Melorheostosis of the Axial and Appendicular Skeleton With Soft-Tissue Involvement. Clin Nucl Med, 42(7), 537-539, doi: 10.1097/RLU.0000000000001647 PMID:28319505 .
- Pavlidis , P., & Alachiotis , N. (2017). A survey of methods and tools to detect recent and strong positive selection. Journal of Biological Research-Thessaloniki, 24(7).
- Pampouchidou, A., Simos, P.G., Marias, K., Meriaudeau, F., Yang, F., Pediaditis, M., & Tsiknakis, M.N. (2017). Automatic Assessment of Depression Based on Visual Cues: A Systematic Review . IEEE Transactions on Affective Computing, IEEE (http://ieeexplore.ieee.org/document/8052569/), doi: 10.1109/TAFFC.2017.2724035.
- Papadakis Z., G., Millo, C., Karantanas, A., Bagci, U., & Patronas, NJ. (2017). Avascular Necrosis of the Hips With Increased Activity on 68Ga-DOTATATE PET/CT. Clin Nucl Med, 42(3), 214-215, doi: 10.1097/RLU.0000000000001513 PMID:28033218 .
- Papadakis Z., G., Millo, C., Sadowski, SM., Karantanas, A., Bagci, U., & Patronas, NJ. (2017). Breast Fibroadenoma With Increased Activity on 68Ga DOTATATE PET/CT. Clin Nucl Med, 42(2), 145-146, doi: 10.1097/RLU.0000000000001463 PMID:27879489 .
- Manikis, G., Marias, K., Lambregts, D. M., Nikiforaki, K., Heeswijk, M.V., Bakers, F. CH, Beets-Tan, R. G., & Papanikolaou, N. (2017). Diffusion weighted imaging in patients with rectal cancer: Comparison between Gaussian and non-Gaussian models. PLoS One, 12(9), e0184197, Public Library of Science https://doi.org/10.1371/journal.pone.0184197.
- Kondylakis, H., Koumakis, L., Hanold, S., Nwankwo, I., Forgó, N., Marias, K., Tsiknakis, M.N., & Graf, N. (2017). Donor’s Support Tool: Enabling Informed Secondary Use of Patient’s Biomaterial and Personal Data. International Journal of Medical Informatics, 282-292, Elsevier doi: 10.1016/j.ijmedinf.2016.10.019 .
- Sfakianakis, S.G., Bei, E. S., & Zervakis, M.E. (2017). Exploratory analysis of local gene groups in breast cancer guided by biological networks. Health and Technology, 7(1), 119-132, (21907188), DOI: 10.1007/s12553-016-0155-1 https://www.scopus.com/inward/record.uri?eid=2-s2.0-85015235670&doi=10.1007%2fs12553-016-0155-1&partnerID=40&md5=80c45346a74f50328be85da84c88eb67.
- Lakiotaki, K., Kanterakis, A., Kartsaki, E., Katsila, T., Patrinos, GP., & Potamias, G.A. (2017). Exploring public genomics data for population pharmacogenomics. PLoS One, 12(8), e0182138, Public Library of Science.
- Papadakis Z., G., Millo, C., Sadowski, SM., Karantanas, A., Bagci, U., & Patronas, NJ. (2017). Fibrous Dysplasia Mimicking Malignancy on 68Ga-DOTATATE PET/CT. Clin Nucl Med, 42(3), 209-210, doi: 10.1097/RLU.0000000000001527 PMID:28072620.
- Oraiopoulou, M.E., Tzamali, E., Tzedakis, G., Vakis, A., Papamatheakis, J., & Sakkalis, V. (2017). In vitro/ in silico study on the role of doubling time heterogeneity among primary Glioblastoma cell lines. BioMed Research International, Special Issue: Basic and Translational Advances in Glioblastoma (BTAG), Hindawi (https://www.hindawi.com/journals/bmri/2017/8569328/), doi: 10.1155/2017/8569328.
- Katehakis, D.G., Kondylakis, H., Koumakis, L., Kouroubali, A., & Marias, K. (2017). Integrated Care Solutions for the Citizen: Personal Health Record Functional Models to support Interoperability. European Journal for Biomedical Informatics (EJBHI), 13(1), 41-56.
- Koumakis, L., & Roussos, P, Potamias, G.A. (2017). minepath.org: a free interactive pathway analysis web server. Nucleic Acids Research, W116-W121, Oxford Academic doi: https://doi.org/10.1093/nar/gkx278 Web server Issue (Annual).
- Henriquez, P., Matuszewski, B., Andreu, Y., Bastiani, L., Colantonio, S., Coppini, G., Acunto, M., Favilla, R., Germanese, D., Giorgi, D., Marraccini, P., Martinelli, M., Morales, M.A., Pascali, M.A., Righi, M., Salvetti, O., Larsson, M., Stromberg, T., Randeberg, L., Bjorgan, A., Giannakakis, G., Pediaditis, M., Chiarugi, F., Christinaki, E., Marias, K., & Tsiknakis, M.N. (2017). Mirror mirror on the wall... an unobtrusive intelligent multisensory mirror for well-being status self-assessment and visualization. IEEE Transaction on Multimedia, 19(7), 1467-1481, doi: https://doi.org/10.1109/tmm.2017.2666545.
- Kapli, P., Lutteropp, S., Zhang, J., Kobert, K., Pavlidis , P., Stamatakis, A., & Flouri, T. (2017). Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics, 33(11), 1630-1638.
- Troullinou, G., Kondylakis, H., Daskalaki, E., & Plexousakis, D. (2017). Ontology Understanding without Tears: The summarization approach. The Semantic Web journal.
- Venianaki, M., Salvetti, O., de Bree, E., Maris, Th.G., Karantanas, A., Kontopodis, E., Nikiforaki, K., & Marias, K. (2017). Pattern recognition and pharmacokinetic methods on DCE-MRI data for tumor hypoxia mapping in sarcoma. Multimedia Tools and Applications, (1573-7721 (Online ISSN)), DOI 10.1007/s11042-017-5046-6.
- Papadakis Z., G., Karantanas, A., & Perisinakis, K. (2017). Pulmonary embolism diagnostics of pregnant patients: What is the recommended clinical pathway considering the clinical value and associated radiation risks of available imaging tests?. Phys Med, pii: S1120-1797(17)30237-5 doi:10.1016/j.ejmp.2017.07.017 PMID:28760505.
- Pampouchidou, A., Pediaditis, M., Maridaki, A., Awais, M., Vazakopoulou, C.-M., Sfakianakis, S.G., Tsiknakis, M.N., Simos, P.G., Marias, K., Yang, F., & Meriaudeau, F. (2017). Quantitative comparison of motion history image variants for video-based depression assessment. EURASIP Journal on Image and Video Processing, 64, Springer Open (https://jivp-eurasipjournals.springeropen.com/articles/10.1186/s13640-017-0212-3), Special Issue on “Applications of Visual Analysis of Human Behaviour” doi: https://doi.org/10.1186/s13640-017-0212-3.
- Katehakis, D.G., Pangalos, G., & Prentza, A. (2017). Security Improvements for Better and Safer Cross-Border ePrescription and Patient Summary Services. International Journal of Reliable and Quality E-Healthcare (IJRQEH), 6(1), 18-28, doi:10.4018/IJRQEH.2017010102.
- Nikiforaki, K., Manikis, G., Boursianis, T., Marias, K., Karantanas, A., & Maris, T (2017). The Impact of Spin Coupling Signal Loss on Fat Content Characterization in Multi-Echo multi echo acquisitions with different echo spacing. Magnetic Resonance Imaging, 6-12, Elsevier doi: http://doi.org/10.1016/j.mri.2016.12.011 .
- Katsaros, V. K., Nikiforaki, K., Manikis, G., Marias, K., Liouta, E., Boskos, C., Kyriakopoulos, G., Stranjalis, G., & Papanikolaou, N. (2017). Whole tumor MR Perfusion histogram analysis in assessment of patients with gliomas: Differentiation between high- and low-grade tumors. , 2(1).
- Katsaros, V. K., Nikiforaki, K., Manikis, G., Marias, K., Liouta, E., Boskos, C., Kyriakopoulos, G., Stranjalis, G., & Papanikolaou, N. (2017). Whole tumor MR Perfusion histogram analysis in the preoperative assessment of patients with gliomas: Differentiation between high- and low-grade tumors. Hellenic Journal of Radiology (HJR), 2(1).
- Pavlidis , P., Xu, D., Thamadilok, S., Redwood, E., Fox , S., Blekhman, R., Ruhl, S., & Gokcumen, O. (2016). Recent evolution of the salivary mucin MUC7. Scientific Reports, 6, Article Nr: 3.
- Lagani, V., Karozou, A., Gomez-Cabrero, D., Silberberg, G., & Tsamardinos, I. (2016). A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinformatics, 17(S-1).
- Spanakis, C., Mathioudakis, E., Kampanis, N.A., Tsiknakis, M.N., & Marias, K. (2016). A Proposed Method for Improving Rigid Registration Robustness. International Journal of Computer Science and Information Security, 14, 1-11, (19475500).
- Gorini, A., Mazzocco, K., Kondylakis, H., & McVie, G, Pravettoni, G (2016). A web-based interactive tool to improve breast cancer patient centredness. Ecancermedicalscience., 10(659), Ecancermedicalscience.
- Spanakis, M., Kontopodis, E., Van Cauter, S., Sakkalis, V., & Marias, K. (2016). Assessment of DCE-MRI parameters for brain tumors through implementation of physiologically –based pharmacokinetic models approaches for Gd-DOTA. Journal of Pharmacokinetics and Pharmacodynamics, 19 September 2016, 43(5), 529-547, Springer US (1567-567X, 1573-8744 , https://doi.org/10.1007/s10928-016-9493-x), doi: 10.1007/s10928-016-9493-x.
- Kondylakis, H., Koumakis, L., Tsiknakis, M.N., Marias, K., & Kiefer, S. (2016). Big Data in Support of the Digital Cancer Patient. ERCIM News, 27-28.
- Kartalis, N., Manikis, G., Loizou, L., Albiin, N., Zollner, F.G., Del Chiaro, M., Marias, K., & Papanikolaou, N. (2016). Diffusion-weighted MR imaging of pancreatic cancer: A comparison of mono-exponential, bi-exponential and non-Gaussian kurtosis models. European Journal of Radiology Open, 3, 79-85, (2352-0477).
- Kartalis, N., Manikis, G., Loizou, L., Albiin, N., Zollner, F.G., Del Chiaro, M., Marias, K., & Papanikolaou, N. (2016). Diffusion-weighted MR imaging of pancreatic cancer: A comparison of mono-exponential, bi-exponential and non-Gaussian kurtosis models. European Journal of Radiology, 79-85, Elsevier (2352-0477), doi: http://dx.doi.org/10.1016/j.ejro.2016.04.002.
- Vizirianakis, I. S., Mystridis, G. A., Avgoustakis, K, Fatouros, D. G., & Spanakis, M. (2016). Enabling personalized cancer medicine decisions: The challenging pharmacological approach of PBPK models for nanomedicine and pharmacogenomics. Oncol Rep. 2016 .
- Kuchinke, W., Ohmann, Ch., Stenzhorn, H., Anguista, A., Sfakianakis, S.G., Graf, N., & Demotes, J. (2016). Ensuring sustainability of software tools and services by cooperation with a research infrastructure. Personalized Medicine, 13(1), 43-55, (17410541), DOI: 10.2217/pme.15.43 https://www.scopus.com/inward/record.uri?eid=2-s2.0-84954452354&doi=10.2217%2fpme.15.43&partnerID=40&md5=84190772b4efcd8a31d3e17554da8dbf .
- Lakiotaki, K., Kartsaki, E., Kanterakis, A., Katsila, T., Patrinos, GP., & Potamias, G.A. (2016). ePGA: A Web-Based Information System for Translational Pharmacogenomics. PLoS One, 11(9), e0162801, Public Library of Science.
- Lagani, V., Karozou, A., Gomez-Cabrero, D., Silberberg, G., & Tsamardinos, I. (2016). Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinformatics, 17.
- Takis G., P., Oraiopoulou, M.E., Konidaris, C., Troganis N., & A. (2016). H-NMR based metabolomics study for the detection of the human urine metabolic profile effects of Origanum dictamnus tea ingestion. Food and Function, The Royal Society of Chemistry doi: 10.1039/c6fo00560h.
- Koumakis, L., Kanterakis, A., Kartsaki, E., Chatzimina, M., Zervakis, M.E., Tsiknakis, M.N., Vassou, D., Kafetzopoulos, D., Marias, K., Moustakis, V.A., & Potamias, G.A. (2016). MinePath: mining for phenotype differential sub-paths in molecular pathways. PLOS Computational Biology, 12(11), Public Library of Science.
- Marakakis, M., & Kondylakis, H. (2016). Mode Analysis During Program Development. International Journal on Artificial Intelligence Tools (IJAIT), 25(2).
- Charonyktakis, P., Plakia, M., Tsamardinos, I., & Papadopouli, M. (2016). On User-Centric Modular QoE Prediction for VoIP Based on Machine-Learning Algorithms. IEEE Transactions on Mobile Computing, 15(6), 1443-1456.
- Mehta, S., Hughes, N. P., Li , S., Jubb, A., Adams, R., Lord, S., Koumakis, L., van Stiphout, R., Padhani, A., Makris, A., Buffa, F., & Harris, A. L. (2016). Radiogenomics monitoring in breast cancer identifies metabolism and immune checkpoints as early actionable mechanisms of resistance to anti-angiogenic treatment. EBioMedicine, 109-116, Elsevier doi: https://doi.org/10.1016/j.ebiom.2016.07.017.
- Katehakis, D.G., Pangalos, G., & Prentza, A. (2016). Research Note: A European eHealth Space for Moving Cross-border ePrescription and Patient Summary Services Forward. Transforming Government: People, Process and Policy, 10(3), 478-504, (ISSN: 1750-6166).
- Troullinou, G., Kondylakis, H., & Plexousakis, D. (2016). Semantic Partitioning for RDF Datasets. Information Search, Integration, and Personlization, part of the Communications in Computer and Information Science, 99-115, Springer.
- Giannakakis, G., Pediaditis, M., Manousos, D., Kazantzaki, E., Chiarugi, F., Simos, P.G., Marias, K., & Tsiknakis, M.N. (2016). Stress and anxiety detection using facial cues from videos. Biomedical Signal Processing and Control, 31, 89-101, ELSEVIER doi: http://dx.doi.org/10.1016/j.bspc.2016.06.020.
- Stavrinidis, G., Michelakis, K., Kontomitrou, V., Giannakakis, G., Sevrisarianos, M., Sevrisarianos, G., Chaniotakis, N., Alifragis, Y., & Konstantinidis, G. (2016). Su-8 microneedles based dry electrodes for electroencephalogram. Microelectronic Engineering, 159, 114-120.
- Spanakis, E.G., Santana, S., Tsiknakis, M.N., Marias, K., Sakkalis, V., Teixeira, A., Janssen, J.H., de Jong, H., & Tziraki, C. (2016). Technology-Based Innovations to Foster Personalized Healthy Lifestyles and Well-Being: A Targeted Review. J Med Internet Res , 18(6), e128, DOI: 10.2196/jmir.4863, PMID: 27342137, http://www.jmir.org/2016/6/e128/.
- Renzi, C., Fioretti, C., Mazzocco, K., Manfrinati, A., Kondylakis, H., Kazantzaki, E., Koumakis, L., Marias, K., Tsiknakis, M.N., & Pravettoni, G (2016). The development of a psycho‐emotional and family resilience assessment within an eHealth platform. Psycho-Oncology , 25(3), 195.
- Nikiforaki, K., Manikis, G., Boursianis, T., Marias, K., Karantanas, A., & Maris, Th.G. (2016). The impact of spin coupling signal loss on fat content characterization in multi-echo acquisitions with different echo spacing. , 97-100, Elsevier https://doi.org/10.1016/j.mri.2016.12.011 .
- Kondylakis, H., Claerhout, B., Keyur, M., Koumakis, L., Marias, K., Perez-Rey, D., Schepper, K. de, Tsiknakis, M.N., & Bucur, A. (2016). The INTEGRATE Project: Delivering solutions for efficient multi-centric clinical research and trials. Journal of Biomedical Informatics.
- Schaller, S., Marinova-Schmidt, V., Setzer, M., Kondylakis, H., Griebel, L., Sedlmayr, M., Graessel, E., Maler, J.M., Kirn, S., & Kolominsky-Rabas, P. (2016). Usefulness of a tailored eHealth service for informal caregivers and professionals in the dementia treatment and care setting: the eHealthMonitor Dementia Portal. JMIR Research Protocols.
- Andreu, Y., Chiarugi, F., Colantonio, S., Giannakakis, G., Giorgi, D., Henriquez, P., Kazantzaki, E., Manousos, D., Marias, K., Matuszewski, B., Pascali, M.A., Pediaditis, M., Raccichini, G., & Tsiknakis, M.N. (2016). Wize mirror - a smart, multisensory cardio-metabolic risk monitoring system. Computer Vision and Image Understanding, 148, 3-22.
- Bucur, A., van Leeuwen, J, Christodoulou, N., Sigdel, K., Argyri, K., Koumakis, L., Graf, N., & Stamatakos, G.S. (2016). Workflow-driven clinical decision support for personalized oncology. BMC medical informatics and decision making, 16(2), 87, BioMed Central doi: 10.1186/s12911-016-0314-3.
- Marketakis, Y., Minadakis, N., Kondylakis, H., Konsolaki, K., Samaritakis, G., Theodoridou, M., Flouris, G., & Doerr, M. (2016). X3ML mapping framework for information integration in cultural heritage and beyond. International Journal on Digital Libraries, 1-19.
- Roniotis, A., Oraiopoulou, M.E., Tzamali, E., Kontopodis, E., Van Cauter, S., Sakkalis, V., & Marias, K. (2015). A proposed paradigm shift in initializing cancer predictive models with DCE-MRI based PK parameters: A feasibility study. Cancer Informatics , 14(S4), 7-18.
- Angelini, P., Binucci, C., Lozzo, G., Didimo, W., Grilli, L., Montecchiani, F., Patrignani, M., & Tollis, I.G. (2015). Algorithms and bounds for drawing non-planar graphs with crossing-free subgraphs. Computational Geometry, 50, 34-48.
- Kontopodis, E., Kanli, G., Manikis, G., Van Cauter, S., & Marias, K. (2015). Assessing Treatment Response Through Generalized Pharmacokinetic Modeling of DCE-MRI Data. , 14(4), 41-51.
- Karavasili, C., Spanakis, M., Papagiannopoulou, D., Vizirianakis, I. S., Fatouros, D. G., & Koutsopoulos, S. (2015). Bioactive self-assembling lipid-like peptides as permeation enhancers for oral drug delivery. J Pharm Sci. 2015, 104(7).
- Koumakis, L., Kamana, S, Potamias, G.A., Sfakianakis, S.G., van Leeuwen, J, Zacharioudakis, G., Moustakis, V.A., Zervakis, M.E., Bucur, A., Marias, K., Graf, N., & Tsiknakis, M.N. (2015). Bridging miRNAs and pathway analysis in clinical decision support; a case study in nephroblastoma. Network Modeling Analysis in Health Informatics and Bioinformatics, 4(1).
- Koumakis, L., Sigdel, K., Potamias, G.A., Sfakianakis, S.G., van Leeuwen, J, Zacharioudakis, G., Moustakis, V.A., Zervakis, M.E., Bucur, A., Marias, K., Graf, N., & Tsiknakis, M.N. (2015). Bridging miRNAs and pathway analysis in clinical decision support: a case study in nephroblastoma. Network modeling analysis in health informatics and bioinformatics, 1-12, Springer doi: 10.1007/s13721-015-0102-5.
- Triantafillou, S., & Tsamardinos, I. (2015). Constraint-based causal discovery from multiple interventions over overlapping variable sets. Journal of Machine Learning Research, 16(1), 2147-2205.
- Lagani, V., Chiarugi, F., Thomson, S., Fursse, J., Lakasing, E., Jones, R.W., & Tsamardinos, I. (2015). Development and validation of risk assessment models for diabetes-related complications based on the DCCT/EDIC data. Journal of Diabetes and its Complications, 29(4), 479-487.
- Genitsaridi , I., Kondylakis, H., Koumakis, L., Marias, K., & Tsiknakis, M.N. (2015). Evaluation of Personal Health Record Systems through the Lenses of EC Research Projects. Computers in Biology and Medicine Journal, 59, 175-185.
- Binucci, C., Giacomo, E., Didimo, W., Montecchiani, F., Patrignani, M., Symvonis, A., & Tollis, I.G. (2015). Fan-planarity: Properties and complexity. Theoretical Computer Science, 589, 76-86.
- Crespo-Garcia, S., Reichart, N., Hernandez-Matas, C., Zabulis, X., Kociok, N., Brockmann, C., Joussen, A.M., & Strauß, O. (2015). In Vivo Analysis of the Time and Spatial Activation Pattern of Microglia in the Retina Following Laser-Induced Choroidal Neovascularization. Experimental Eye Research, 139, 13-21, (ISSN 0014-4835).
- Martens, M. H., Lambregts, D. M., Papanikolaou, N., Alefantinou, S., Maas, M., Manikis, G., Marias, K., Riedl, R., & Beets, G. , Beets-Tan, R. G. (2015). Magnetization transfer imaging to assess tumour response after chemoradiotherapy in rectal cancer. .
- Zablith, F., Antoniou, G., d'Aquin, M., Flouris, G., Kondylakis, H., Motta, E., Plexousakis, D., & Sabou, M. (2015). Ontology Evolution: A Process Centric Survey. Knowledge Engineering Review (KER), 30(1), 45-75, Cambridge Journals (pdf).
- Tsamardinos, I., Rakhshani, A., & Lagani, V. (2015). Performance-Estimation Properties of Cross-Validation-Based Protocols with Simultaneous Hyper-Parameter Optimization. International Journal on Artificial Intelligence Tools, 24(5).
- Kanterakis, A., Kuiper, J., Potamias, G.A., & Swertz, M.A. (2015). PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. Source Code for Biology and Medicine, 10, 1-14, Springer Nature.
- Lagani, V., Chiarugi, F., Manousos, D., Verma, V., Fursse, J., Marias, K., & Tsamardinos, I. (2015). Realization of a service for the long-term risk assessment of diabetes-related complications. Journal of Diabetes and its Complications, 29(5), 691-698.
- Sfakianaki, P., Koumakis, L., Sfakianakis, S.G., Iatraki, G., Zacharioudakis, G., Graf, N., Marias, K., & Tsiknakis, M.N. (2015). Semantic biomedical resource discovery: a Natural Language Processing framework. BMC Medical Informatics and Decision Making , 15(77).
- Hochedlinger, N, Nitzlnader, M, Falgenhauer, M, Welte, S, Hayn, D, Koumakis, L., Potamias, G.A., Tsiknakis, M.N., Saraceno, D., Rinaldi, E., Ladenstein, R., & Schreier, G. (2015). Standardized Data Sharing in a Paediatric Oncology Research Network-A Proof-of-Concept Study. Stud Health Technol Inform, 27-34, doi: 10.3233/978-1-61499-524-1-27.
- Notas, G. , Pelekanou, V., Kampa, M., Alexakis, K., Sfakianakis, S.G., Laliotis, A., Askoxilakis, J., Tsentelierou, E., Tzardi, M., Tsapis, A., & Castanas, E. (2015). Tamoxifen induces a pluripotency signature in breast cancer cells and human tumors. Molecular Oncology.
- Tzedakis, G., Tzamali, E., Marias, K., & Sakkalis, V. (2015). The Importance of Neighborhood Scheme Selection in Agent-based Tumor Growth Modeling. Cancer Informatics.
- Marias, K., Papanikolaou, N., Beets-Tan, R. G., & Nikiforaki, K. (2015). Whole-liver diffusion-weighted MRI histogram analysis: effect of the presence of colorectal hepatic metastases on the remaining liver parenchyma. , 27(4), 399-404, doi: 10.1097.
- Farmaki, C., Sakkalis, V., Gjini, K., Boutros, N. N., & Zouridakis, G. (2014). Assessment of Sensory Gating Deficit in Schizophrenia Using a Wavelet Transform Methodology on Auditory Paired-Click Evoked Potentials. Modern Electroencephalographic Assessment Techniques. Neuromethods, 91, 205-229, Humana Press doi: https://doi.org/10.1007/7657_2014_71.
- Spanakis, E.G., Sakkalis, V., Marias, K., & Traganitis, A.P. (2014). Cross Layer Interference Management in Wireless Biomedical Networks. Entropy, 16(4), 2085-2104, Multidisciplinary Digital Publishing Institute (MDPI).
- Potamias, G.A., Lakiotaki, K., Katsila, T., Lee, MT., Topouzis, S., Cooper, DN., & Patrinos, GP. (2014). Deciphering next-generation pharmacogenomics: an information technology perspective. Open Biology , 4(7), 66-77, (http://rsob.royalsocietypublishing.org/content/4/7/140071.short ), doi: 10.1098/rsob.140071.
- Kondylakis, H., Kazantzaki, E., Koumakis, L., Genitsaridi , I., Marias, K., Gorini, A., Mazzocco, K., & Pravettoni, G, Burke, D, McVie, G, Tsiknakis, M.N. (2014). Development of Interactive Empowerment services in support of personalized medicine. eCancer Medical Science Journal.
- Karathanasis , N., Tsamardinos, I., & Poirazi, P. (2014). Don't use a cannon to kill the ... miRNA mosquito. Bioinformatics , 30(7), 1047-1048.
- Tzamali, E., Grekas, G., Marias, K., & Sakkalis, V. (2014). Exploring the competition between proliferative and invasive cancer phenotypes in a continuous spatial model. PLoS ONE, 9(8), e103191, PLoS (https://doi.org/10.1371/journal.pone.0103191), doi: 10.1371/journal.pone.0103191.
- Spanakis, M., & Marias, K. (2014). In silico evaluation of gadofosveset pharmacokinetics in different population groups using the SimcypΒ® simulator platform. , 2(2), (doi:10.1186/s40203-014-0002-x).
- Kalaitzakis, G., Kavroulakis, L., Boursianis, T., Veneti, S., Kontopodis, E., Marias, K., Papadaki, E., Karantanas, A., & Maris, Th.G. (2014). Magnetic relaxation measurements on tissue mimicking phantoms: comparison between different fitting algorithms in MRI T2 calculations. Physica Medica , 30(1), 118-119.
- Sfakianakis, S.G., Bei, E. S., Zervakis, M.E., Vassou, D., & Kafetzopoulos, D. (2014). On the Identification of Circulating Tumor Cells in Breast Cancer. Biomedical and Health Informatics, IEEE J Biomed Health Inform, 18(3), 773-782.
- Giacomo, E., Didimo, W., Liotta, G., Montecchiani, F., & Tollis, I.G. (2014). Techniques for Edge Stratification of Complex Graph Drawings. Journal of Visual Languages & Computing, 25(4), 533-543.
- Maris, Th.G., Boursianis, T., Kalaitzakis, G., Pappas, E., Manikis, G., Marias, K., & Karantanas, A. (2014). The development of an easily adopted head and abdomen DWI quality control phantom and test different regression algorithms for precise Apparent Diffusion Coefficient (ADC) measurements. Physica Medica.
- Stamatakos, G.S., Dionysiou, D.D., Lunzer, A., Belleman, R., Kolokotroni, E., Georgiadi, E., Erdt, M., Dong, F., Rueping, S., Giatili, S., d Onofrio, A., Sfakianakis, S.G., Marias, K., Desmedt, C., Tsiknakis, M.N., & Graf, N. (2014). The Technologically Integrated Oncosimulator: Combining Multiscale Cancer Modeling with Information Technology in the In Silico Oncology Context. . , 18(3), 840-854, doi: 10.1109/JBHI.2013.2284276.
- Hristoskova, A., Sakkalis, V., Zacharioudakis, G., Tsiknakis, M.N., & De Turck, F. (2014). Ontology-Driven Monitoring of Patient’s Vital Signs Enabling Personalized Medical Detection and Alert. Sensors , 14(1), 1598-1628.
- Vavoulas, G., Pediaditis, P., Chatzaki, C, Spanakis, E.G., & Tsiknakis, M.N. (2014). The MobiFall Dataset: Fall Detection and Classification with a Smartphone. International Journal of Monitoring and Surveillance Technologies Research (IJMSTR), 2(1), 44-56, IGI Global.
- Sakkalis, V., Sfakianakis, S.G., Tzamali, E., Marias, K., Stamatakos, G.S., Misichroni, F., Ouzounoglou, E., Kolokotroni, E., Dionysiou, D.D., Johnson, D., McKeever, S., & Graf, N. (2014). Web-Based Workflow Planning Platform Supporting the Design and Execution of Complex Multiscale Cancer Models. IEEE Journal of Biomedical and Health Informatics.
- Lagani, V., Koumakis, L., Chiarugi, F., Lakasing, E., & Tsamardinos, I. (2013). A systematic review of predictive risk models for diabetes complications based on large scale clinical studies. Journal of Diabetes and Its Complications.
- Hunter, P., Chapman , T, Coveney, P.V., de Bono, B., Diaz, V., Fenner, J., Frangi, A.F., Harris, P., Hose, R., Kohl, P., Lawford, P., McCormack, K., Mendes, M., Omholt, S., Quarteroni, A., Shublaq, N, Skar, J., Stroetmann, K, Tegner, J., Thomas, S.R, Tollis, I.G., Tsamardinos, I., van Beek, J.H.G.M., & Viceconti, M. (2013). A vision and strategy for the VPH: 2012 update. Interface Focus.
- Lagani, V., & Kortas, G, Tsamardinos, I. (2013). Biomarker signature identification in “omics” data with multi-class outcome. Computational and Structural Biotechnology Journal, 6(7).
- Johnson, D., McKeever, S., Stamatakos, G.S., Dionysiou, D.D., Graf, N., Sakkalis, V., Marias, K., Wang, Z., & Deisboeck, T. (2013). Dealing with Diversity in Computational Cancer Modeling. Cancer Informatics, 12, 115-124.
- Karakasilioti, I, Kamileri, I, Chatzinikolaou, G, Kosteas, T, Vergadi, E, Robinson, AR, Tsamardinos, I., & Rozgaja, TA, Siakouli, S, Tsatsanis, C, Niedernhofer, L J, Garinis, G. (2013). DNA Damage Triggers a Chronic Autoinflammatory Response, Leading to Fat Depletion in NER Progeria. Cell Metabolism, 18(3), 403-415.
- Kouroubali, A., Katehakis, D.G., Berler, A., & Tsiknakis, M.N. (2013). Electronic Health Record: Luxury or Need? (in Greek). Health Review Scientific Magazine, 24(140), 5-9, Greece: Hellenic Health Services Management Association (HHSMA).
- Arcuri, F., Lucca, L. F., Lagani, V., Rosadini, V., Mercurio, G., & Mazzucchi, A. (2013). Evaluation of autonomies in the severely brain injured: the Progression of Autonomies Scale. Functional Neurology, 28(1), 29-38.
- Papadopoulos, G., Karkoulia, E, Tsamardinos, I., & Porcher, C, Ragoussis, J, Bungert, J, Strouboulis, J (2013). GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis. Nucleic Acids Research Journal, 41(9), 4938-4948.
- Laine, M., Moustakis, V.A., Koumakis, L., Potamias, G.A., & Loos, B.G. (2013). Modeling Susceptibility to Periodontitis. Journal of Dental Research, 92(1), 45-50, doi:10.1177/0022034512465435.
- Kondylakis, H., & Plexousakis, D. (2013). Ontology Evolution without Tears. Journal of Web Semantics (2013), 19, 42-58, Elsevier.
- Genitsaridi , I., Kondylakis, H., Koumakis, L., Marias, K., & Tsiknakis, M.N. (2013). Towards Intelligent Personal Health Record Systems: Review, Criteria and Extensions. Procedia Computer Science , 13, 327-334, (1877-0509).
- Tsamardinos, I., Borboudakis, G., Christodoulou, E., & Roe, O. D. (2012). Chemosensitivity Prediction of Tumours Based on Expression, miRNA, and Proteomics Data . International Journal of Systems Biology and Biomedical Technologies (IJSBBT), 1(2), 1-19.
- Koumakis, L., Moustakis, V.A., Zervakis, M.E., Kafetzopoulos, D., & Potamias, G.A. (2012). Coupling Regulatory Networks and Microarays: Revealing Molecular Regulations of Breast Cancer Treatment Responses. Artificial Intelligence: Theories and Applications. Lecture Notes in Computer Science, 7297, 239-246.
- Tsiaras, V., & Tollis, I.G. (2012). DAGmaps and ε-Visibility Representations of DAGs: Algorithms and Characterizations. Journal of Graph Algorithms and Applications, 16(2), 359-380.
- Spanakis, E.G., Chiarugi, F., Kouroubali, A., Spat, S., Beck, B., Asanin, S., Rosengren, P., Gergely, G.T., & Thestrup, J. (2012). Diabetes Management Using Modern Information and Communication Technologies and New Care Models. i-JMR nteractive Journal of Medical Research, 1(5).
- Dato, S., Montesanto, A., Lagani, V., Jeune, B., Christensen, K., & Passarino, G. (2012). Frailty phenotypes in the elderly based on cluster analysis: a longitudinal study of two Danish cohorts. Evidence for a genetic influence on frailty. AGE, 34(3), 571-582.
- Roniotis, A., Manikis, G., Sakkalis, V., Zervakis, M.E., Karatzanis, I., & Marias, K. (2012). High grade glioma diffusive modeling using statistical tissue information and diffusion tensors extracted from atlases. IEEE Transactions on Information Technology in Biomedicine., 16(2), 255-263.
- Roniotis, A., Sakkalis, V., Karatzanis, I., Zervakis, M.E., & Marias, K. (2012). In-depth analysis and evaluation of diffusive glioma models. IEEE Transactions on Information Technology in Biomedicine 2012, 16(3), 299-307.
- Maojo, V., Fritts, M., Martin-Sanchez, F., De La Iglesia, D., Cachau, R. E. , Garcia-Remesal, M., Crespo, J., Mitchell, J.A., Anguita, A., Baker, N., Barreiro, J. M., Benitez, S. E., De la Calle, G., Facelli, J. C., Ghazal, P., Gonzalez-Nilo, F., Graf, N., Grangeat, P., Hermosilla, I., Hussein, R., Kern, J., Koch, S., Legre, Y., Lopez-Alonso, V., Lopez-Campos, G., Milanesi, L., Moustakis, V.A., Munteanu, C., Otero, P., Pazos, A., Perez-Rey, D., Potamias, G.A., Sanz, F., & Kulikowski, C. (2012). Nanoinformatics: developing new computing applications for nanomedicine. Computing, 94(6), 521-539.
- Graf, N., Anguita, A., Bucur, A., Burke, D, Claerhout, B., Coveney, P.V., d Onofrio, A., Forgó, N., Hahn, C, Hintz, J, Jefferys, B, Kiefer, S., Marias, K., McVie, G, Ohmann, Ch., Persidis, A, Dong, F., Rossi, S, Rueping, S., Schwarz, U., Stamatakos, G.S., Stanulla, M, Stenzhorn, H., Tanaka, Y., & Taylor, M, Tsiknakis, M.N. (2012). P-MEDICINE: A SOLUTION FOR TRANSLATIONAL RESEARCH?. PEDIATRIC BLOOD & CANCER, WILEY PERIODICALS, 59.
- Roniotis, A., Marias, K., Sakkalis, V., Manikis, G., & Zervakis, M.E. (2012). Simulating radiotherapy effect in high grade glioma by using diffusive modeling and brain atlases. Journal of Biomedicine and Biotechnology 2012.
- Brown, L.E., Tsamardinos, I., & Hardin, D. (2012). To Feature Space and Back: Identifying Top-Weighted Features in Polynomial Support Vector Machines Models. Intelligent Data Analysis , 16(4), 551-579.
- Tsamardinos, I., Triantafullou, S., & Lagani, V. (2012). Towards Integrative Causal Analysis of Heterogeneous Datasets and Studies. Journal of Machine Learning Research, 13, 1097-1157.
- Potamias, G.A., Kaforou, S., & Kafetzopoulos, D. (2012). Towards Optimal Microarray Universal Reference Sample Designs: An In-Silico Optimization Approach. International Journal of Systems Biology and Biomedical Technologies (IJSBBT), 1(2), 66-77.
- Dato, S., Soerensen, M, Montesanto, A., Lagani, V., Passarino, G., Christensen, K., & Christiansen, L. (2012). UCP3 polymorphisms, hand grip performance and survival at old age: association analysis in two Danish middle aged and elderly cohorts. Mechanisms of Ageing and Development, 133(8), 530-537.
- Pediaditis, M., Tsiknakis, M.N., & Leitgeb, N. (2012). Vision-based human motion detection, analysis and recognition in epilepsy – a systematic review. Comput. Methods Programs Biomed., 108(3), 1133-1148.
- Genitsaridi , I., Bikakis, A., & Antoniou, G. (2011). DEAL: A Distributed Authorization Language for Ambient Intelligence. International Journal of Ambient Computing and Intelligence (IJACI), 3(4), 9-24.
- Brochhausen, M., Spear, A.D., Cocos, C., Weiler, G., Martin, L., Anguita, A., Stenzhorn, H., Daskalaki, E., Schera, F., Schwarz, U., Sfakianakis, S.G., Kiefer, S., Doerr, M., Graf, N., & Tsiknakis, M.N. (2011). The ACGT Master Ontology and its applications - Towards an ontology-driven cancer research and management system. Journal of Biomedical Informatics, 44(1), 8-25, (1532-0480; 1532-0464).
- Tzamali, E., Poirazi, P., Tollis, I.G., & Reczko, M. (2011). A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities. BMC Systems Biology 2011, 5(167).
- Sakkalis, V. (2011). Applied strategies towards EEG/MEG biomarker identification in clinical and cognitive research. Biomarkers in Medicine, future medicine, 5(1), 93-105.
- Christodoulou, E., Sakkalis, V., Tsiaras, V., & Tollis, I.G. (2011). BrainNetVis: An open-access tool to effectively quantify and visualize brain networks. Computational Intelligence & Neuroscience CIN.
- Arbelo, E., Trucco, E., Dogac, A., Luepkes, C., Chronaki, C., Hinterbuchner, L., Ploessnig, M., Yang, M., Guillén, A., & Brugada, J. (2011). Brugada iCARDEA: Personalized Remote Monitoring of Atrial Fibrillation in Patients with Electronic Implant Devices. PACE (ICPES2011, P193), 34(11).
- Marias, K., Dionysiou, D.D., Sakkalis, V., Graf, N., Bohle, R., Coveney, P.V., Wan, S., Folarin, A., Büchler, P., Reyes, M., Clapworthy, G., Liu, E., Sabczynski, J., Bily, T., Roniotis, A., & Tsiknakis, M.N. (2011). Clinically-Driven Design of Multiscale Cancer Models: the Contra Cancrum Project Paradigm. J. R. Soc Interface Focus, 1, 450-461.
- Santana, S.M.V., Lausen, B., Bujnowska-Fedak, M., Chronaki, C., Prokosch, H.U., & Wynn, R. (2011). Informed citizen and empowered citizen in health: results from an European survey. BMC Family Practice 2011 (Impact Factor 1.47), 12(20).
- Chronaki, C., Sfakianakis, S.G., Petrakis, Y., Yang, M., Radulescu, M., Eichelberg, M., Erturkmen, G.L., Hinterbuchner, L., Arbelo, E., & Dogac, A. (2011). Integrating Out-Patient and Remote Follow-up of Cardiovascular Implantable Electronic Device Patients. PACE (ICPES2011), 34(11), 1357-8.
- Chronaki, C., Kontogiannis, V., Panagopoulos, D., Katehakis, D.G., Vourvahakis, D., & Koutentaki-Mountraki, K. (2011). Interoperability in Disaster Medicine and Emergency Management. J. Health Inform. 2011 , 3, 87-99.
- Zervakis, M.E., Michalopoulos, K., Iordanidou, V., & Sakkalis, V. (2011). Intertrial Coherence and Causal Interaction among Independent EEG Components. Journal of Neuroscience Methods, 197(2), 302-316.
- Katehakis, D.G., Halkiotis, S., & Kouroubali, A. (2011). Materialization of Regional Health Information Networks in Greece: Electronic Health Record Barriers & Enablers. Journal of Healthcare Engineering, Multi-Science Publishing, 2(3), 389-403.
- Tsiliki, G., Zervakis, M.E., Ioannou, M., Sanidas, E., Stathopoulos, E., Potamias, G.A., Tsiknakis, M.N., & Kafetzopoulos, D. (2011). Multi-platform Data Integration in Microarray Analysis. IEEE Transactions on Information Technology in Biomedicine, 15(6), 806-812, IEEE Engineering in Medicine and Biology Society, IEEE Computer Society [Technical Co-Sponsor] (1089-7771).
- Trucco, E., Arbelo, E., Erturkmen, G.L., Yang, M., Kabak, Y., Chronaki, C., Hinterbuchner, L., Guillén, A., Dogac, A., & Brugada, J. (2011). Personalized Remote Monitoring of Atrial Fibrillation in Patients with Electronic Implant Devices. PACE (ICPES2011, P189), 34(11), 1443-44.
- Sakkalis, V. (2011). Review of Advanced Techniques for the estimation of Brain Connectivity measured with EEG/MEG. Computers in Biology and Medicine, 2011.
- Erturkmen, G.L., Dogac, A., Yuksel, M., Arbelo, E., Hinterbuchner, L., Chronaki, C., & Eichelberg, M. (2011). The Personalized Remote Monitoring of the Atrial Fibrillation Patients with Electronic Implant Devices. Journal of Health Engineering, 2(2).
- Santana, S.M.V., Lausen, B., Bujnowska-Fedak, M., Chronaki, C., Kummervold, P.E., Rasmussen, J., & Sørensen, T. (2010). Online Communication Between Doctors and Patients in Europe: Status and Perspectives. , 12(2), e20.
- Brochhausen, M., Grigonyte, G., Martin, L., Graf, N., Haller, J., Smith, B., & Tsiknakis, M.N. (2010). The ACGT Master Ontology and its applications – Towards an ontology-driven cancer research and management system.
- Sakkalis, V., Cassar, T., Zervakis, M.E., Giurcaneanu, C.D., Bigan, C., Micheloyannis, S., Camilleri, K.P., Fabri, S.G., Tsiaras, V., Karakonstantaki, E., & Michalopoulos, K. (2010). A Decision Support Framework for the Diagnosis of Children with Mild Epilepsy based on EEG Analysis. Journal of Neuroengineering and Rehabilitation, 7(24).
- Hunter, P., Coveney, P.V., de Bono, B., Diaz, V., Fenner, J., Frangi, A.F., Harris, P., Hose, R., Kohl, P., Lawford, P., McCormack, K., Mendes, M., Omholt, S., Quarteroni, A., Skar, J., Tegner, J., Randall, S.Th., Tollis, I.G., Tsamardinos, I., van Beek, J.H.G.M., & Viceconti, M. (2010). A vision and strategy for the virtual physiological human in 2010 and beyond. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 368(1920), 2595-2614, (1364-503X; 1364-503X).
- Zampetakis, L.A., & Moustakis, V.A. (2010). An exploratory research on the factors stimulating corporate entrepreneurship in the Greek public sector. International Journal of Manpower, 31(8), 871-887.
- Papamanthou, Ch., & Tollis, I.G. (2010). Applications of Parameterized st-Orientations. Journal of Graph Algorithms and Applications, 14(2), 337-365.
- Sfakianakis, S.G., Blazadonakis, M.E., Dimou, I.N., Zervakis, M.E., Tsiknakis, M.N., Potamias, G.A., Kafetzopoulos, D., & Lowe, D. (2010). Decision Support Based on Genomics: Integration of Data and Knowledge Driven Reasoning. International Journal of Biomedical Engineering and Technology , 3(3/4), 287-307.
- Chiarugi, F., Colantonio, S., Emmanouilidou, D., Martinelli, M., Moroni, D., & Salvetti, O. (2010). Decision support in heart failure through processing of electro- and echocardiograms . Artificial Intelligence in Medicine, 50(2), 95-104.
- Roniotis, A., Marias, K., Sakkalis, V., & Zervakis, M.E. (2010). Diffusive Modelling of Glioma Evolution: A review. Journal of Biomedical Science and Engineering, Scientific Research, 3(5), 501-508.
- Skounakis, E., Farmaki, C., Sakkalis, V., Roniotis, A., Banitsas, K., Graf, N., & Marias, K. (2010). DoctorEye: A clinically driven multifunctional platform, for accurate processing of tumors in medical images. Intelligent signal and image processing in eHealth - The Open Medical Informatics Journal, 4, 105-115.
- Sakkalis, V., Tsiaras, V., & Tollis, I.G. (2010). Graph Analysis and Visualization for Brain Function Characterization using EEG Data. Journal of Healthcare Engineering, 1(3), 435-460.
- Trigo, J.D., Chiarugi, F., Alesanco, Á., Martínez-Espronceda, M., Serrano, L., Chronaki, C., Escayola, J., Martínez, I., & García, J. (2010). Interoperability in Digital Electocardiography: Harmonization of ISO/IEEE x73-PHD and SCP-ECG . IEEE Transactions on Information Technology in Biomedicine, 14(6), 1303-17.
- Aliferis, C.F., Statnikov, A.R., Tsamardinos, I., Mani, S., & Koutsoukos, X.D. (2010). Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification Part I: Algorithms and Empirical Evaluation. Journal of Machine Learning Research, 11, 171-234.
- Aliferis, C.F., Statnikov, A.R., Tsamardinos, I., Mani, S., & Koutsoukos, X.D. (2010). Local Causal and Markov Blanket Induction for Causal Discovery and Feature Selection for Classification. Part II: Analysis and Extensions. Journal of Machine Learning Research, Special Topic on Causality, 11, 235-284.
- Gkirtzou, K., Tsamardinos, I., Tsakalides, P., & Poirazi, P. (2010). MatureBayes: A probabilistic algorithm for identifying the mature miRNA within novel precursors. PLoS ONE, 5(8), e11843, (1932-6203; 1932-6203).
- Chiarugi, F., Emmanouilidou, D., & Tsamardinos, I. (2010). Morphological classification of heartbeats to dominant and non-dominant in ECG signals. Physiological Measurements, 31(5), 611-631.
- Zampetakis, L.A., & Moustakis, V.A. (2010). Quantifying uncertainty in ranking problems with composite indicators: A Bayesian approach. Journal of Modeling in Management, 5(1), 63-80.
- Kanterakis, A., Potamias, G.A., Zacharioudakis, G., Koumakis, L., Sfakianakis, S.G., & Tsiknakis, M.N. (2010). Scientific discovery workflows in bioinformatics: a scenario for the coupling of molecular regulatory pathways and gene-expression profiles. Stud Health Technol Inform, 160, 1304-1308.
- Farmaki, C., Marias, K., Sakkalis, V., & Graf, N. (2010). Spatially adaptive active contours: A semi-automatic tumor segmentation technique. International journal of computer assisted radiology and surgery , 5(4), 369-84.
- Lagani, V., & Tsamardinos, I. (2010). Structure-Based Variable Selection for Survival Data. Bioinformatics 2010, 26(15), 1887-1894.
- Vourvahakis, D., Chronaki, C., Kontogiannis, V., Panagopoulos, D., & Stergiopoulos, S. (2010). Traffic Accidents in Crete (1996-2006): the Role of the Emergency Coordination Center. .
- Zampetakis, L.A., Beldekos, P., & Moustakis, V.A. (2009). "Day-to-day" entrepreneurship within organisations: The role of trait Emotional Intelligence and Perceived Organisational Support. European Management Journal, 27(3), 165-175, (02632373).
- Graf, N., Hoppe, A., Georgiadi, E., Belleman, R., Desmedt, C., Dionysiou, D.D., Erdt, M., Jacques, J., Kolokotroni, E., Lunzer, A., Tsiknakis, M.N., & Stamatakos, G.S. (2009). "In silico" oncology for clinical decision making in the context of nephroblastoma. Klinische Pädiatrie, 221(3), 141-149, (14393824).
- Politis, Y., Litos, Ch., Grigoroudis, E., & Moustakis, V.A. (2009). A business excellence model for the hotel sector: Implementation to high-class Greek hotels. Benchmarking, 16(4), 462-483, (14635771).
- Tsironis, L., Anastasiou, K., & Moustakis, V.A. (2009). A framework for BPML assessment and improvement: A case study using IDEF0 and eEPC. Business Process Management Journal, 15(3), 430-461, (14637154).
- Sakkalis, V., Doru, G.C., Xanthopoulos, P., Zervakis, M.E., Tsiaras, V., Yang, Y., Karakonstantaki, E., & Micheloyannis, S. (2009). Assessment of linear and nonlinear synchronization measures for analyzing EEG in a mild epileptic paradigm. IEEE Transactions on Information Technology in Biomedicine, 13(4), 433-441, (10897771).
- Tzamali, E., Poirazi, P., Tollis, I.G., & Reczko, M. (2009). Computational Identification of Bacterial Communities. International Journal of Biological and Life Sciences, 1(4), 185-191.
- Tsiaras, V., Triantafillou, S., & Tollis, I.G. (2009). Dagmaps: Space filling visualization of directed acyclic graphs. J. Graph Algorithms Appl., 13(3), 319-347.
- Tsiaras, V., Triantafulou, S., & Tollis, I.G. (2009). DAGmaps: Space Filling Visualization of Directed Acyclic Graphs. J.Graph Algorithms Appl., 13(3), 319-347.
- Aliferis, C.F., Statnikov, A.R., Tsamardinos, I., Schildcrout, J.S., Shepherd, B.E., & Harrell, Jr F.E. (2009). Factors Influencing the Statistical Power of Complex Data Analysis Protocols for Molecular Signature Development from Microarray Data. PLoS ONE, 4(3), (19326203).
- Lorenzi, N.M., Kouroubali, A., Detmer, D.E., & Bloomrosen, M. (2009). How to successfully select and implement electronic health records (EHR) in small ambulatory practice settings. BMC Medical Informatics and Decision Making, 9(1), (14726947).
- Tsiknakis, M.N., & Kouroubali, A. (2009). Organizational factors affecting successful adoption of innovative eHealth services: A case study employing the FITT framework. Int.J.Med.Informatics, 78(1), 39-52, (13865056).
- Zervakis, M.E., Blazadonakis, M.E., Tsiliki, G., Danilatou, V., Tsiknakis, M.N., & Kafetzopoulos, D. (2009). Outcome prediction based on microarray analysis: A critical perspective on methods. BMC Bioinformatics, 10, (14712105).
- Oulas, A., Boutla, A., Gkirtzou, K., Reczko, M., Kalantidis, K., & Poirazi, P. (2009). Prediction of novel microRNA genes in cancer-associated genomic regions - A combined computational and experimental approach. Nucleic acids research, 37(10), 3276-3287, (03051048).
- Tsamardinos, I., & Triantafulou, S. (2009). The Possibility of Integrative Causal Analysis: Learning from Different Datasets and Studies. Journal of Engineering Intelligent Systems, 17(1), CRL Publishing (ISSN 1472-8915).
- Ktonas, P.Y., Golemati, S., Xanthopoulos, P., Sakkalis, V., Ortigueira, M.D., Tsekou, H., Zervakis, M.E., Paparrigopoulos, T., Bonakis, A., Economou, N.T., Theodoropoulos, P., Papageorgiou, S.G., Vassilopoulos, D., & Soldatos, C.R. (2009). Time-frequency analysis methods to quantify the time-varying microstructure of sleep EEG spindles: Possibility for dementia biomarkers?. Journal of neuroscience methods, 185(1), 133-142, (01650270).
- Lakiotaki, K., Delias, P., Sakkalis, V., & Matsatsinis, N.F. (2009). User profiling based on multi-criteria analysis: The role of utility functions. Operational Research, 9(1), 3-16, (11092858).
- Roumeliotaki, T., & Chronaki, C. (2009). Using the internet for health purposes: Perceptions and attitudes of Greeks in the 15-35 years age group. Archives of Hellenic Medicine, 26(2), 246-256, (11053992).
- Ruping, S., Wegener, D., Sfakianakis, S.G., & Sengstag, T. (2009). Workflows for intelligent monitoring using proxy services. Studies in health technology and informatics, 147, 277-282, Netherlands (0926-9630; 0926-9630).
- Flouris, G., Manakanatas, D., Kondylakis, H., Plexousakis, D., & Antoniou, G. (2008). Ontology change: Classification and survey. Knowl Eng Rev, 23(2), 117-152, (ISSN:0269-8889).
- Zampetakis, L.A., Moustakis, V.A., Dewett, T., & Zampetakis, K. (2008). A longitudinal analysis of student creativity scripts. Journal of Creative Behavior, 42(4), 237-254, (00220175).
- Tsiknakis, M.N., Brochhausen, M., Nabrzyski, J., Pucacki, J., Sfakianakis, S.G., Potamias, G.A., Desmedt, C., & Kafetzopoulos, D. (2008). A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of postgenomic clinical trials on cancer. IEEE Trans Inf Technol Biomed, 12(2), 205-217, (10897771).
- Brown, L.E., & Tsamardinos, I. (2008). A Strategy for Making Predictions Under Manipulation. Journal of Machine Learning Research, 3, 35-52, Hong-Kong, China: Journal of Machine Learning Research.
- Kern, J., Fister, K., Petrovecki, M., Polasek, O., Stevanovic, R., Vuletic, S., Maojo, V., Martin-Sanchez, F., Potamias, G.A., Gonzalez Bernaldo, de Q.F., Gonzalez, D., Legre, Y., & Moustakis, V.A. (2008). ACTION-grid: International Networking in Grid Computing and Biomedical Informatics. Acta Informatica Medica, 16(3), 156-158.
- Papamanthou, Ch., & Tollis, I.G. (2008). Algorithms for computing a parameterized st-orientation. Theor Comput Sci, 408(2-3), 224-240, (03043975).
- Kummervold, P.E., Chronaki, C., Lausen, B., Prokosch, H.U., Rasmussen, J., Santana, S.M.V., Staniszewski, A., & Wangberg, S. (2008). eHealth trends in Europe 2005-2007: A population-based survey. Journal of Medical Internet Research, 10(4), (14388871).
- Chronaki, C., Kouroubali, A., & Stathopoulou, A. (2008). Internet Use for Health and Illness in Greece. Arch of Hell Medicine.
- Chiarugi, F. (2008). New developments in the automatic analysis of the surface ECG: the case of atrial fibrillation. Hellenic journal of cardiology : HJC = Hellenike kardiologike epitheorese, 49(4), 207-221, Greece (1109-9666).
- Sakkalis, V., Cassar, T., Zervakis, M.E., Camilleri, K.P., Fabri, S.G., Bigan, C., Karakonstantaki, E., & Micheloyannis, S. (2008). Parametric and nonparametric EEG analysis for the evaluation of EEG activity in young children with controlled epilepsy. , United States (1687-5265 (Print)).
- Graf, N., Desmedt, C., Buffa, F., Kafetzopoulos, D., Forgó, N., Kollek, R., Hoppe, A., Stamatakos, G.S., & Tsiknakis, M.N. (2008). Post-genomic clinical trials: The perspective of ACGT. eCancerMedicalScience Journal, 2008 (online journal), 1(66), eCancerMedicalScience Journal.
- Wangberg, S., Andreassen, H., Prokosch, H.U., Santana, S.M.V., Sørensen, T., & Chronaki, C. (2008). Relations between Internet use, socio-economic status (SES), social support and subjective health. Health promotion international, 23(1), 70-77, (c) 2007 The Author(s) (0957-4824).
- Grech, R., Cassar, T., Muscat, J., Camilleri, K.P., Fabri, S.G., Zervakis, M.E., Xanthopoulos, P., Sakkalis, V., & Vanrumste, B. (2008). Review on solving the inverse problem in EEG source analysis. Journal of Neuroengineering and Rehabilitation, 5(1).
- Grigoroudis, E., Litos, Ch., Moustakis, V.A., Politis, Y., & Tsironis, L. (2008). The assessment of user-perceived web quality: Application of a satisfaction benchmarking approach. European Journal of Operational Research, 187(3), 1346-1357, (0377-2217).
- Avguleas, I., Gkirtzou, K., Triantafillou, S., Bikakis, A., Antoniou, G., Kontopoulos, E., & Bassiliades, N. (2008). Visualization of proofs in defeasible logic. RuleML, 197-210.
- Darrell, A., Meyer, H., Marias, K., Brady, M.J., & Ripoll, J. (2008). Weighted filtered backprojection for quantitative fluorescence optical projection tomography. Phys.Med.Biol., 53(14), 3863-3881, (00319155).
- Dimitriadis, S., Marias, K., & Orphanoudakis, S.C. (2007). A multi-agent platform for content-based image retrieval. Multimedia Tools Appl., 33(1), 57-72, Hingham, MA, USA: Kluwer Academic Publishers (1380-7501).
- Thireou, T., & Reczko, M. (2007). Bidirectional long short-term memory networks for predicting the subcellular localization of eukaryotic proteins. IEEE/ACM Trans.Comput.BioL.Bioinf., 4(3), 441-446, (15455963).
- Maojo, V., & Tsiknakis, M.N. (2007). Biomedical Informatics and HealthGRIDs: A European Perspective - Past and Current Efforts and Projects in the Synergy of Bionformatics and Medical Informatics. Engineering in Medicine and Biology Magazine, IEEE, 26(3), 34-41, (0739-5175).
- Zampetakis, L.A., Tsironis, L., & Moustakis, V.A. (2007). Creativity development in engineering education: the case of mind mapping. The Journal of Management Development, 26, 370-380(11).
- Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., Anthoulakis, D., & Tsiknakis, M.N. (2007). Delivering a Lifelong Integrated Electronic Health Record Based on a Service Oriented Architecture. IEEE Transactions on Information Technology in Biomedicine, 11(6), 639-650.
- Tsiknakis, M.N., Rueping, S., Martin, L., Sfakianakis, S.G., Bucur, A., Sengstag, T., Brochhausen, M., & Pucacki, J. (2007). Developing a European Grid infrastructure for cancer research: vision, architecture, and services. eCancerMedicalScience Journal (on line journal), 1, eCancerMedicalScience Journal.
- Buck, A.H., Santoyo-Lopez, J., Robertson, K., Kumar, D.S., Reczko, M., & Ghazal, P. (2007). Discrete Clusters of Virus-Encoded MicroRNAs Are Associated with Complementary Strands of the Genome and the 7.2-Kilobase Stable Intron in Murine Cytomegalovirus. J.Virol., 81(24), 13761-13770.
- Esterle, L. (2007). eHealth: a challenging issue for users and Consumers. Archives of Hellenic Medicine, 24(4), Archives of Hellenic Medicine.
- Andreassen, H., Bujnowska-Fedak, M., Chronaki, C., Dumitru, R., Pudule, I., Santana, S.M.V., Voss, H., & Wynn, R. (2007). European citizens" use of E-health services: A study of seven countries. BMC Public Health, 7(1), 53, (1471-2458).
- Kouroubali, A., Kontogiannis, V., Zeaki, M., Zervopoulos, M., Loulaki, H., Kompolaki, C., Hatziarsenis, M., & Vourvahakis, D. (2007). Evaluation strategy in the Prehospital Emergency Care Coordination Centre in Crete. PREHOSPITAL AND DISASTER MEDICINE, 22(2), s34, USA: WADEM; 1999 (1049-023X).
- Potamias, G.A., & Kanterakis, A. (2007). Feature selection for the promoter recognition and prediction problem. Int.J.Data Warehouse.Min., 3(3), 60-78, (15483924).
- Chronaki, C., Kouroubali, A., Stathopoulou, A., Roumeliotaki, T., Orphanoudaki, E., Esterle, L., & Tsiknakis, M.N. (2007). Internet use for health and illness in Greece. Preliminary results of a European study on eHealth consumer trends. Archives of Hellenic Medicine Magazine, 24(5), 440-457.
- Bansard, J.Y., Rebholz-Schuhmann, D., Cameron, G., Clark, D., van Mulligen, E., Beltrame, F., Barbolla, E.D.H., Martin-Sanchez, F., Milanesi, L., Tollis, I.G., Van, der Lei J., & Coatrieux, J.L. (2007). Medical Informatics and Bioinformatics: A Bibliometric Study. Information Technology in Biomedicine, IEEE Transactions on, 11(3), 237-243, (1089-7771).
- Potamias, G.A., Koumakis, L., Kanterakis, A., Moustakis, V.A., Kafetzopoulos, D., & Tsiknakis, M.N. (2007). Mining interesting clinico-genomic associations: The HealthObs approach. Artificial Intelligence and Innovations 2007: from Theory to Applications, IFIP International Federation for Information Processing, 247, 137-145, (15715736; 0387741607 (ISBN); 9780387741604 (ISBN)).
- Chiarugi, F., Varanini, M., Cantini, F., Conforti, F., & Vrouchos, G. (2007). Noninvasive ECG as a Tool for Predicting Termination of Paroxysmal Atrial Fibrillation. Biomedical Engineering, IEEE Transactions on, 54(8), 1399-1406, (0018-9294).
- Dogrusoz, U., Kakoulis, K.G., Madden, B., & Tollis, I.G. (2007). On labeling in graph visualization. Inf Sci, 177(12), 2459-2472, (00200255).
- Sfakianakis, S.G., Chronaki, C., Chiarugi, F., Conforti, F., & Katehakis, D.G. (2007). Reflections on the role of open source in health information system interoperability. Yearbook of medical informatics, 50-60, Germany (0943-4747; 0943-4747).
- Chronaki, C., Berthier, A., Lleo, M.M., Kontogiannis, V., Lenglet, A., Vourvahakis, D., Simon, F., Josseran, L., Lafaye, M., & Sanchez, J.L. (2007). SAFE: Satellite Communication for Health Early Warning . PREHOSPITAL AND DISASTER MEDICINE, 22(2), s103, USA: WADEM; 1999 (1049-023X).
- Rebholz-Schuhmann, D., Cameron, G., Clark, D., van Mulligen, E., Coatrieux, J.L., Del Hoyo Barbolla, E., Martin-Sanchez, F., Milanesi, L., Porro, I., Beltrame, F., Tollis, I.G., & Van, der Lei J. (2007). SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - Exploring current scientific literature for emerging topics. BMC Bioinform., 8(SUPPL. 1), (14712105).
- Stamatakos, G.S., Dionysiou, D.D., Graf, N., Sofra, N.A., Desmedt, C., Hoppe, A., Uzunoglu, N.K., & Tsiknakis, M.N. (2007). The Oncosimulator: a multiscale simulation platform of tumor growth and organism response to therapeutic schemes in the clinical setting. eCancerMedicalScience Journal (on line journal), 6628-6631, eCancerMedicalScience Journal.
- Vourvahakis, D., Zeaki, M., Loulaki, S., Zervopoulos, M., Kontogiannis, V., Chronaki, C., & Panagopoulos, D. (2007). Traffic Accidents in Crete (1996-2006): The Role of EKAB-Crete. PREHOSPITAL AND DISASTER MEDICINE, 22(2), s28, USA: WADEM; 1999 (1049-023X).
- Tsiaras, V., Triantafillou, S., & Tollis, I.G. (2007). Treemaps for directed acyclic graphs. Graph Drawing, 377-388.
- Gonianakis, I.M., Neonakis, I.K., Baritaki, M.A., Kypriotakis, Z., Potamias, G.A., Bouros, D., & Kontou-Fili, K.S. (2006). A 10-year aerobiological study (1994-2003) in the Mediterranean island of Crete, Greece: Grasses and other weeds, aerobiological data, and botanical and clinical correlations. Allergy Asthma Proc., 27(5), 363-370, (10885412).
- Linguraru, M.G., Marias, K., English, R.E., & Brady, M.J. (2006). A biologically inspired algorithm for microcalcification cluster detection. Med.Image Anal., 10(6), 850-862, (13618415).
- Six, J.M., & Tollis, I.G. (2006). A framework and algorithms for circular drawings of graphs. J.Discrete Algorithms, 4(1), 25-50, (15708667).
- Moustakis, V.A., Tsironis, L., & Litos, Ch. (2006). A Model of Web Site Quality Assessment. The Quality management journal, 13(2), 22, (1068-6967).
- Kakoulis, K.G., & Tollis, I.G. (2006). Algorithms for the multiple label placement problem. Comput Geom Theory Appl, 35(3), 143-161, (09257721).
- Bilalis, N., Wassenhove, L.N.Van., Maravelakis, E., Enders, A., Moustakis, V.A., & Antoniadis, A. (2006). An analysis of European textile sector competitiveness. Measuring Business Excellence, 10, 27-35(9).
- Conforti, D., Costanzo, D., Lagani, V., Perticone, F., Parati, G., Kawecka-Jaszcz, K., Marsh, A., Biniaris, C., Stratakis, M., Fontanelli, R., Guerri, D., Salvetti, O., Tsiknakis, M.N., Chiarugi, F., Gamberger, D., & Valentini, M. (2006). HEARTFAID: A knowledge based platform for supporting the clinical management of elderly patients with heart failure. J.Inf.Technol.Healthc., 4(5), 283-300, (1479649X).
- Conforti, D., Costanzo, D., Perticone, F., Parati, G., Kawecka-Jaszcz, K., Marsh, A., Biniaris, C., Stratakis, M., Fontanelli, R., Guerri, D., Salvettis, O., Tsiknakis, M.N., Chiarugi, F., Gamberger, D., & Valentini, M. (2006). HEARTFAID: A Knowledge Based Platform of Services for Supporting Medical-Clinical Management of Heart Failure Within Elderly Population. Stud Health Technol Inform, 108-125.
- Moustakis, V.A. (2006). Measuring and benchmarking the innovativeness of SMEs: A three-dimensional fuzzy logic approach. Production Planning & Control, 17(3), 283-292, © Taylor & Francis Ltd (0953-7287).
- Koumakis, L., Moustakis, V.A., Kanterakis, A., & Potamias, G.A. (2006). Mining time series with mine time. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 3955 LNAI, 158-168, (03029743; 354034117X (ISBN); 9783540341178 (ISBN)).
- Gonianakis, I.M., Neonakis, I.K., Baritaki, M.A., Bouros, D., Potamias, G.A., & Kontou-Fili, K.S. (2006). Mold allergy in the Mediterranean Island of Crete, Greece: a 10-year volumetric, aerobiological study with dermal sensitization correlations. Allergy and Asthma Proceedings : The Official Journal of Regional and State Allergy Societies, 27(5), 354-362, United States (1088-5412; 1088-5412).
- Sakkalis, V., Zervakis, M.E., & Micheloyannis, S. (2006). Significant EEG features involved in mathematical reasoning: evidence from wavelet analysis. Brain topography, 19(1-2), 53-60, United States (0896-0267 (Print); 1573-6792 (Electronic)).
- Marias, K., Behrenbruch, C.P., Parbhoo, S., Seifalian, A., & Brady, M.J. (2005). A registration framework for the comparison of mammogram sequences. IEEE Trans.Med.Imaging, 24(6), 782-790, (02780062).
- Tsiknakis, M.N., Katehakis, D.G., Sfakianakis, S.G., Kavlentakis, G., & Orphanoudakis, S.C. (2005). An Architecture for Regional Health Information Networks Addressing Issues of Modularity and Interoperability. Journal of Telecommunications and Information Technology (JTIT), 4, 26-39.
- Marias, K., Ripoll, J., Meyer, H., Ntziachristos, V., & Orphanoudakis, S.C. (2005). Image analysis for assessing molecular activity changes in time-dependent geometries. IEEE Trans.Med.Imaging, 24(7), 894-900, (02780062).
- Chronaki, C., & Chiarugi, F. (2005). Interoperability as a Quality Label for Portable & Wearable Health Monitoring Systems. Studies in health technology and informatics, 117, 108-116, Amsterdam; Oxford: IOS Press (1586035657).
- Potamias, G.A., Koumakis, L., & Moustakis, V.A. (2005). Mining XML Clinical Data: the HealthObs System. Ingéniere des Systèmes d"Information, 10(1), 59-79.
- Markaki, M., Orphanoudakis, S.C., & Poirazi, P. (2005). Modelling reduced excitability in aged CA1 neurons as a calcium-dependent process. Neurocomputing, 65-66(SPEC. ISS.), 305-314, (09252312).
- Stamatakis, A. (2005). Phylogenetics: Applications, Software and Challenges. Cancer Genomics - Proteomics, 2(5), 301-305.
- Marias, K., Behrenbruch, C.P., Highnam, R., Parbhoo, S., Seifalian, A., & Brady, M.J. (2004). A mammographic image analysis method to detect and measure changes in breast density. Eur.J.Radiol., 52(3), 276-282, (0720048X).
- Tzelepis, Th.Z., Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2004). Design and Implementation of "Two-level" Clinical Information Systems, based on Archetypes. The Official International E.C.Qua.L. Journal for Quality of Life Research (J.Q.L.R.), 2(1), 101-105.
- Behrenbruch, C.P., Marias, K., Armitage, P.A., Yam, M., Moore, N.R., English, R.E., Clarke, P.J., Leong, F.J., & Brady, M.J. (2004). Fusion of contrast-enhanced breast MR and mammographic imaging data. The British journal of radiology, 77 Spec No 2, S201-8, England (0007-1285; 0007-1285).
- Potamias, G.A., Koumakis, L., & Moustakis, V.A. (2004). Gene Selection via Discretized Gene-Expression Profiles and Greedy Feature-Elimination. , 3025, 256-266.
- Potamias, G.A., & Koumakis, L. (2004). HealthObs: An Integrated System for Mining Clinical XML-formatted Data. Journal for Quality of Life Research (JQLR), 2(1), 76-82.
- Orphanoudakis, S.C. (2004). HYGEIAnet: the integrated regional health information network of Crete. Stud Health Technol Inform, 100, 66-78, (09269630).
- Potamias, G.A., Kafetzopoulos, D., & Tsiknakis, M.N. (2004). Integrated Clinico-Genomics Environment: Design and Operational Specification. Journal for Quality of Life Research (JQLR), 2(1), 145-150.
- Manganas, A., Tsiknakis, M.N., Leisch, E., Karefilaki, L., Monsieurs, K.G., Bossaert, L.L., & Giorgini, F. (2004). JUST in time health emergency interventions: an innovative approach to training the citizen for emergency situations using virtual reality techniques and advanced IT tools (the Web-CD). Studies in health technology and informatics, 103, 315-326, Netherlands (0926-9630).
- Monsieurs, K.G., Vogels, C., Bossaert, L.L., Meert, P., Manganas, A., Tsiknakis, M.N., Leisch, E., Calle, P.A., & Giorgini, F. (2004). Learning effect of a novel interactive basic life support CD: The JUST system. Resuscitation, 62(2), 159-165, (03009572).
- Thireou, T., & Reczko, M. (2004). Long Short Term Memory Networks for Protein Localization Prediction. Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computional Biology 2004 (ISMB/ECCB 2004), Glasgow, UK: Oxford University Press.
- Reczko, M., & Hatzigeorgiou, A.G. (2004). Prediction of the subcellular localization of eukaryotic proteins using sequence signals and composition. Proteomics, 4(6), 1591-1596, (16159853).
- Potamias, G.A., & Dermon, C.R. (2004). Protein synthesis profiling in the developing brain: A graph theoretic clustering approach. Comput.Methods Programs Biomed., 76(2), 115-129, (01692607).
- Lees, P.J., Chronaki, C., & Chiarugi, F. (2004). Standards and Interoperability in Digital Electrocardiography. The OpenECG Project. Hellenic Journal of Cardiology, 45(6), 364-369.
- Martin-Sanchez, F., Iakovidis, I., Norager, S., Maojo, V., De Groen, P., Van, der Lei J., Jones, T., Abraham-Fuchs, K., Apweiler, R., Babic, A., Baud, R., Breton, V., Cinquin, P., Doupi, P., Dugas, M., Eils, R., Engelbrecht, R., Ghazal, P., Jehenson, P., Kulikowski, C., Lampe, K.H., De Moor , G., Orphanoudakis, S.C., Rossing, N., Sarachan, B., Sousa, A., Spekowius, G., Thireos, G., Zahlmann, G., Zvarova, J., Hermosilla, I., & Vicente, F.J. (2004). Synergy between medical informatics and bioinformatics: Facilitating genomic medicine for future health care. J.Biomed.Informatics, 37(1), 30-42, (15320464).
- Manganas, A., Tsiknakis, M.N., Leisch, E., Ponder, M., Molet, T., Herbelin, B., Magnenat-Thalmann, N., Thalmann, D., Fato, M., & Schenone, A. (2004). The JUST VR tool: An innovative approach to training personnel for emergency situations using virtual reality techniques. J.Inf.Technol.Healthc., 2(6), 399-412, (1479649X).
- Kakoulis, K.G., & Tollis, I.G. (2003). A Unified Approach to Automatic Label Placement. Int.J.Comput.Geometry Appl., 13(1), 23-60.
- Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). An Infrastructure for Integrated Electronic Health Record Services: The Role of XML (Extensible Markup Language). , 77, 1074-1079, Gunther Eysenbach; Centre for Global eHealth Innovation, Toronto, Canada (1438-8871).
- Bruun-Rasmussen, M., Bernstein, K., & Chronaki, C. (2003). Collaboration--a new IT-service in the next generation of regional health care networks. International journal of medical informatics, 70(2-3), 205-214, Ireland (1386-5056 (Print)).
- Chronaki, C., Chiarugi, F., Lees, P.J., Charalambous, E., Sykianakis, A., Vrouchos, G., Antonakis, N., Frantzeskakis, G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2003). Digital ECG Databases in the Regional Health Information Network of Crete. International Journal of Bioelectromagnetism, 5(1), 118-119.
- Chamberlain, D.A., Hazinski, M.F., Bossaert, L.L., Carli, P., Gwinnutt, C., Handley, T., Holmberg, S., De Latorre, P., Nolan, J., Steen, P.A., Zideman, D., Aufderheide, T., Berg, R., Billi, J., Braslow, A., Cummins, R.O., Montgomery, W., Nadkarni, V., Stapleton, E., Swanson, M., Bowles, R., Gay, M., Shuster, M., Coovadia, A., Kloeck, W., Milner, B., Dennett, J., Jacobs, I., Mason, P., De Paiva, E.F., Reyes, C., Timerman, S., Cassan, P., Eikeland, H., Kaufmann, C.R., Leisch, E., Schaefer, J., Morallee, K., Okada, K., & Laerdal, T. (2003). Education in resuscitation. Resuscitation, 59(1), 11-43.
- Behrenbruch, C.P., Marias, K., Armitage, P.A., Yam, M., Moore, N.R., English, R.E., Clarke, J., & Brady, M.J. (2003). Fusion of contrast-enhanced breast MR and mammographic imaging data. Medical image analysis, 7(3), 311-340, England (1361-8415; 1361-8415).
- Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). A healthcare information infrastructure to support integrated services over regional health telematics networks. Health IT Journal, 4, 15-18, Medical Records Institute.
- Kontogiannis, T., & Moustakis, V.A. (2002). An experimental evaluation of comprehensibility aspects of knowledge structures derived through induction techniques: a case study of industrial fault diagnosis. Behaviour and Information Technology, 21, 117-135(19).
- Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (2002). An open, component-based information infrastructure for integrated health information networks. Int.J.Med.Informatics, 68(1-3), 3-26, (13865056).
- Chiarugi, F., Lombardi, D., Lees, P.J., Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Support of daily ECG procedures in a cardiology department via the integration of an existing clinical database and a commercial ECG management system. Ann.Noninvasive Electrocardiol., 7(3), 263-270, (1082720X).
- Katehakis, D.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2002). Towards an Integrated Electronic Health Record - Current Status and Challenges in Business Briefing: Global Healthcare 2002. The Official Publication of the World Medical Association.
- Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An infrastructure for integrated electronic health record services: The role of XML (extensible markup language). J.Med.Internet Res., 3(1), 83-91, (14388871).
- Katehakis, D.G., Kostomanolakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2001). An open, component-based information infrastructure to support integrated regional healthcare networks. Medinfo, 10(Pt 1), 18-22, (15696332).
- Katehakis, D.G., Sfakianakis, S.G., Tsiknakis, M.N., & Orphanoudakis, S.C. (2000). An infrastructure for integrated electronic health record services: the role of XML. Technol.Health Care, 8(3-4), 189-190, Amsterdam, The Netherlands, The Netherlands: IOS Press (0928-7329).
- Potamias, G.A., Tsiknakis, M.N., Katehakis, D.G., Karabela, E., Moustakis, V.A., & Orphanoudakis, S.C. (2000). Role-based access to patients clinical data: the InterCare approach in the region of Crete. Studies in health technology and informatics, 77, 1074-1079, Netherlands (0926-9630).
- Potamias, G.A. (1999). MICSL: Multiple Iterative Constraint Satisfaction based Learning. Intell.Data Anal., 3(4), 245-265.
- Tserpes, G., Peristeraki, P., Potamias, G.A., & Tsimenides, N. (1999). Species distribution in the southern Aegean sea based on bottom-trawl surveys. Aquatic Living Resour., 12(3), 167-175, (09907440).
- Markatos, E.P., & Chronaki, C. (1998). A TOP-10 approach to prefetching on Web. Proceedings of INET"98.
- Moustakis, V.A., Blazadonakis, M.E., Marazakis, M., & Potamias, G.A. (1998). Assessment of Boolean minimization in symbolic empirical learning. Appl Artif Intell, 12(4), 329-342, (08839514).
- Orphanoudakis, S.C., Chronaki, C., Tsiknakis, M.N., & Kostomanolakis, S.G. (1998). Telematics in Healthcare. The Kluwer international series in engineering and computer science.VLSI, computer architecture and digital signal processing, (465), 251, (0893-3405).
- Leisch, E., Sartzetakis, S., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). A framework for the integration of distributed autonomous healthcare information systems. Med.Inform., 22(4), 325-335, (03077640).
- Tsiknakis, M.N., Chronaki, C., Kapidakis, S., Nikolaou, Ch., & Orphanoudakis, S.C. (1997). An Integrated Architecture for the Provision of Health Telematic Services Based on Digital Library Technologies. Int.J.on Digital Libraries, 1(3), 257-277.
- Zikos, M., Kaldoudi, E., & Orphanoudakis, S.C. (1997). DIPE: a distributed environment for medical image processing.. Stud Health Technol Inform, 43 Pt B, 465-469, (09269630).
- Katehakis, D.G., Tsiknakis, M.N., Armaganidis, A., & Orphanoudakis, S.C. (1997). Functional and control integration of an ICU, LIS and PACS information system. Studies in health technology and informatics, 43 Pt A, 15-19, NETHERLANDS (0926-9630 (Print)).
- Chronaki, C., Zabulis, X., & Orphanoudakis, S.C. (1997). I2Cnet medical image annotation service. Med.Inform., 22(4), 337-347, (03077640).
- Zikos, M., Kaldoudi, E., & Orphanoudakis, S.C. (1997). Image Processing Within an Integrated Teleradiology Services Network. , CiteSeerX - Scientific Literature Digital Library and Search Engine [http://citeseerx.ist.psu.edu/oai2] (United States).
- G.Potam, I., Moustakis, V.A., & Charissis, G. (1997). Interactive Knowledge Base Construction and Maintenance.. Applied Artificial Intelligence, 11(7), 697, Taylor & Francis (0883-9514).
- Potamias, G.A., Moustakis, V.A., & Charissis, G. (1997). Interactive Knowledge Based Construction and Maintenance. APPLIED ARTIFICIAL INTELLIGENCE, 11(7/8), 697-718, (0883-9514).
- Leisch, E., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). Pre-hospital health emergency management as an integrated service of the Regional Health Telematics Network of Crete.. Stud Health Technol Inform, 43 Pt A, 33-37, (09269630).
- Blazadonakis, M.E., Moustakis, V.A., & Charissis, G. (1997). Seamless care in the health region of Crete: the Star case study. Seamless Telematics Across Regions. Stud Health Technol Inform, 43 Pt A, 157-161, (09269630).
- Chronaki, C., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). Virtual workspaces in I2Cnet. Int.J.Med.Inform., 47(1-2), 115-119, Shannon, Ireland: Elsevier Sci Ireland Ltd (13865056).
- Chronaki, C., Katehakis, D.G., Zabulis, X., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). WebOnCOLL: Medical collaboration in regional healthcare networks. IEEE Trans Inf Technol Biomed, 1(4), 257-269, (10897771).
- Moustakis, V.A., & Herrmann, J. (1997). Where Do Machine Learning and Human-Computer Interaction Meet?. Applied Artificial Intelligence, 11(7-8), 595-609.
- Tsiknakis, M.N., Chronaki, C., Tsilimbaris, M.K., Panagopoulou, S.I., Orphanoudakis, S.C., & Pallikaris, I.G. (1996). A multimedia integration methodology through the meta patient record concept in a cornea outpatient clinic. Invest.Ophthalmol.Vis.Sci., 37(3), (01460404).
- Blazadonakis, M.E., Moustakis, V.A., & Charissis, G. (1996). Deep assessment of machine learning techniques using patient treatment in acute abdominal pain in children. ARTIF.INTELL.MED., 8(6), 527-542, (09333657).
- Orphanoudakis, S.C., Chronaki, C., & Vamvaka, D. (1996). E2Cnet: Content-Based Similarity Search in Geographically Distributed Repositories of Medical Images. , 20(4), 193-207, (pdf).
- Ohmann, Ch., Moustakis, V.A., Yang, Q., & Lang, K. (1996). Evaluation of automatic knowledge acquisition techniques in the diagnosis of acute abdominal pain. Artificial Intelligence in Medicine, 8(1), 23-36, (0933-3657).
- Orphanoudakis, S.C., Chronaki, C., & Vamvaka, D. (1996). I2Cnet: Content-based similarity search in geographically distributed repositories of medical images. COMPUT.MED.IMAGING GRAPH., 20(4), 193-207, Tarrytown, NY, United States: Pergamon Press Inc (08956111).
- Gaga, E., Moustakis, V.A., Vlachakis, Y., & Charissis, G. (1996). ID+: Enhancing medical knowledge acquisition with machine learning. Appl Artif Intell, 10(2), 79-94, (08839514).
- Vassilakis, P., & Moustakis, V.A. (1996). Identifying decision maker"s preferences through a prototype based inductive learning method: A medical case study. Behav Inf Technol, 15(2), 113-122, (0144929X).
- Tsiknakis, M.N., Katehakis, D.G., & Orphanoudakis, S.C. (1996). Intelligent image management in a distributed PACS and telemedicine environment. IEEE Commun Mag, 34(7), 36-45, (01636804).
- Moustakis, V.A., Lehto, M., & Salvendy, G. (1996). Survey of Expert Opinion: Which Machine Learning Method May Be Used for Which Task?. Plast Rubber Compos Process Appl, 8(3), 221-236, (09598111).
- Orphanoudakis, S.C., Kaldoudi, E., & Tsiknakis, M.N. (1996). Technological advances in teleradiology. EUR.J.RADIOL., 22(3), 205-217, (0720048X).
- Moustakis, V.A. (1995). CEG: A case based decision modeling architecture. European Journal of Operational Research, 84(1), 170, (0377-2217).
- Kodratoff, Y., Moustakis, V.A., & Graner, N. (1994). Can machine learning solve my problem?. Applied Artificial Intelligence, 8(1), 1-31.
- Orphanoudakis, S.C., Chronaki, C., & Kostomanolakis, S.G. (1994). E2C: A System for the Indexing, Storage, and Retrieval of Medical Images by Content. , 19(5), 109-122, (pdf).
- Bruno, F., Kindler, H., Leaning, M., Moustakis, V.A., Scherrer, J.R., Schreiber, G., & Stefanelli, M. (1994). GAMES II project: A general architecture for medical knowledge-based systems. COMPUT.METHODS PROGRAMS BIOMED., 45(1-2), 79-81, Co Clare, Ireland: Elsevier Science Ireland Ltd (01692607).
- Orphanoudakis, S.C., Chronaki, C., & Kostomanolakis, S.G. (1994). I2C: A system for the indexing, storage, and retrieval of medical images by content. MED.INFORM., 19(2), 109-122, (03077640).
- Morik, K., Potamias, G.A., Moustakis, V.A., & Charissis, G. (1994). Knowledgeable learning using MOBAL: A medical case study. Appl Artif Intell, 8(4), 579-592, Basingstoke, United Kingdom: Taylor & Francis Ltd (08839514).
- Markatos, E.P., & Chronaki, C. (1994). Trace-Driven Simulation of Data-Alignment and Ohter Factors Affecting Update and Invalidate Based Coherent Memory. , 44-51,, IEEE Computer Society (0-8186-5292-6).
Editorials
- Kondylakis, H., Koumakis, L., Tsiknakis, M.N., & Kiefer, S. (2018). The Vision of Personally Managed Health Data: Barriers, Approaches and Roadmap for the Future. Journal of Biomedical Informatics, 81, 131-132, Elsevier doi: https://doi.org/10.1016/j.jbi.2018.04.003.
Magazine article
- Kouroubali, A., Katehakis, D.G., Berler, A., & Tsiknakis, M.N. (2013). Electronic Health Record: Luxury or Need?. Health Review Scientific Magazine, 24, 5-9.
- Sakkalis, V., & Marias, K. (2012). Could computer viruses be beneficial? (Κακόβουλοι ή ευεργετικοί οι ιοί στους υπολογιστές;). The Economist (Kathimerini), (97), 34-35.
- Spanakis, E.G., & Sakkalis, V. (2012). Digital Information of the Citizens (Τα ψηφιακά δεδομένα των πολιτών). The Economist (Kathimerini), (106), 39.
- Zabulis, X., Triantafyllou, A., Karamaounas, P., Sakkalis, V., Marias, K., Douma, S., & Zamboulis, C. (2012). Eyes (and skin) don't lie. Kathimerini-Econimist Special Issue, 101, 35, (in Greek) .
- Zampoulis, X., Triantafyllou, A., Karamaounas, P., Sakkalis, V., Marias, K., Douma, S., & Zampoulis, Ch. (2012). Eyes (and skin) tell the truth (Τα μάτια (και το δέρμα) λένε την αλήθεια). The Economist (Kathimerini), (101), 35.
- Sakkalis, V., & Lakiotaki, K. (2011). «Παράλογη» ή μήπως ορθολογική και αναμενόμενη η συμπεριφορά μας;. The Economist (Kathimerini), (90), 54-55.
- Sakkalis, V., & Zacharioudakis, G. (2011). Ένας ηλεκτρονικός φύλακας-άγγελος. The Economist (Kathimerini), 94, 34-35.
- Chronaki, C. (2011). Η καινοτομία στην υπηρεσία της Πολιτικής Προστασίας: Χρήσιμα διδάγματα από τη χρήση καινοτομικών τεχνολογιών στην άσκηση EU Poseidon 2011 στην Κρήτη. E&T Magazine of GSRT.
- Katehakis, D.G., & Tollis, I.G. (2010). The Bet of Health (Το στοίχημα της υγείας). The Economist (Kathimerini) – Special Editions, (76), 48-49.
- Sakkalis, V. (2009). Genes: Modern Prophets in a Health Record! (Σύγχρονοι προφήτες στους φακέλους υγείας!). The Economist (Kathimerini), Section Topic: 'Genomic Information Management', (65), 20-22.
- Sakkalis, V. (2007). Wireless Biosensors: Do we hold fate in our hands? (Μπορούμε να κρατήσουμε τη μοίρα στα χέρια μας;). The Economist (Kathimerini), Section Topic: 'Wireless Future', (43), 18-19.
- Trahanias, P.E. (2007). Αυτόνομα, Ευφυή ρομποτικά συστήματα. The Economist (Kathimerini), 2, 48.
- FORTH, ICS (2006). Inauguration ceremony of the TWISTER network in Charakas Primary Care Center and Information Day 'IT and Primary Health Care Center - Applications in Primary Care'. , http://www.patris.gr/articles/80165.
Newsletters articles
- Katehakis, D.G., Kyriakoulakos, N., & Berler, A. (2018). 17th International HL7 Interoperability Conference & 1st European FHIR® Datathon in Athens, Greece. , HL7 Europe(8), 20-22, http://www.hl7.eu/download/eun-08-2018.pdf.
- Chronaki, C., & Skiadas, M. (2009). Report from IHIC2008. .
- Chronaki, C., & Alschuler, L. (2009). Show me your CDA. .
- Alschuler, L., & Chronaki, C. (2008). A New Initiative: Show Me Your CDA! Interoperability Forum. Forum, HL7 News, 18.
- Darrell, A., Swoger, J, Quintana, L, Sharpe, J, Marias, K., Brady, M.J., & Ripoll, J. (2008). Improved fluorescence optical projection tomography reconstruction. Biomedical Optics & Medical Imaging, SPIE Newsroom, DOI: 10.1117/2.1200810.1329.
- Chronaki, C. (2005). Meeting the Health Needs of Rural Communities in Greece Using CDA and Other Open Standards. , 26.
ERCIM News
- Kondylakis, H., Katehakis, D.G., & Kouroubali, A. (2021). Staying Safe in COVID-19. ERCIM news, 124, ERCIM Open Access: Green.
- Katehakis, D.G., & Kouroubali, A. (2019). Digital Health Interoperability as a tool towards Citizen Empowerment. ERCIM News, Special Theme: Digital Health, (118), 31-32, July 17, S2CID: 197538366.
- Spanakis, E.G., & Sakkalis, V. (2019). Resilient Network services for critical mHealth applications over 5G Mobile Network Technologies. ERCIM News 118 July 2019, Special theme: Digital Health, Sara Colantonio (ISTI-CNR) and Nicholas Ayache (Inria)., 17/7/2019.
- Kondylakis, H., Troullinou, G., Stefanidis, K., & Plexousakis, D. (2018). Beyond Summaries for Ontology Exploration. ERCIM News 113, April 2018.
- Spanakis, E.G. (2018). SpeechXRays: A User Recognition Platform Based on Voice Acoustics Analysis and Audio-Visual Identity Verification. ERCIM News 115 October 2018 Special theme: Digital Twins Guest editors: Benjamin Sanderse (CWI) and Edgar Weippl (SBA), 115, 24 Oct 2018, ERCIM News .
- Chronaki, C., Kontogiannis, V., Argyropaidas, P., & Vourvahakis, D. (2012). Innovation in Disaster Management: report from Exercise EU POSEIDON 2011. ERCIM news, 88, 57-58, January.
- Chronaki, C., Kontogiannis, V., Argyropaidas, P., & Vourvahakis, D. (2011). Innovation in Disaster Management: Report from Exercise EU POSEIDON . ERCIM news 88, Jan 2012.
- Dogac, A., Laleci, G., & Chronaki, C. (2011). Intelligent Guideline-driven Approach in Remote Monitoring of Cardiac Implants. ERCIM News, 84, 44-45, January 2011.
- Roniotis, A., Marias, K., & Sakkalis, V. (2010). Modelling the Growth of a Malignant Brain Tumour. ERCIM News, 81, 21-22, April 2010.
- Flouri, E.T., Synolakis, C.E., Kampanis, N.A., & Chronaki, C. (2010). Risk Assessment Study based of the 365AD Earthquake to Drive a Civil Protection Exercise. ERCIM News, 81, 14-15, April 2010.
- Chronaki, C. (2008). Epidemic Intelligence: Satellite-Enabled Applications for Health Early Warning Systems. ERCIM News, 75, 57-58, October 2008.
- Tsamardinos, I. (2007). Causal Data Mining in Bioinformatics. ERCIM News, 69, 40-41, April 2007.
- Sakkalis, V., & Tollis, I.G. (2007). Modelling the Pathophysiological Human Brain Function. ERCIM News, 69, 13-14, April 2007.
- Marias, K., Margaritis, Th., & Tollis, I.G. (2007). Multilevel Analysis and Information Extraction Considerations for Validating 4D Models of Human Pathophysiology. ERCIM News, 69, 37-38, April 2007.
- Tsiknakis, M.N. (2007). Open Grid Services for Improving Medical Knowledge Discovery. ERCIM News, 70, 34-35, July 2007.
- Tollis, I.G., & Ayache, N. (2007). The Digital Patient - Introduction to the special theme. ERCIM News, 69, 20-21, April 2007.
- Reczko, M., Poirazi, P., Oulas, A., Tzamali, E., Manioudaki, M., Tsiaras, V., & Tollis, I.G. (2007). The Impact of Systems Biology on the Digital Patient. ERCIM News, 69, 50-51, April 2007.
- Tsiknakis, M.N. (2006). ACGT - Advancing Clinico-Genomic Trials on Cancer. ERCIM News, 65, 5, April 2006.
- Chronaki, C., & Braak, L. (2006). SAFE: Satellites for Epidemiology and Health Early Warning. ERCIM News, 67, 60-61, October 2006.
- Moustakas, J., Dimitriadis, S., & Marias, K. (2005). A Cognitive Architecture for Semantically Based Medical Image Retrieval. ERCIM News, 62, 28-29, July 2005.
- Orphanoudakis, S.C., Kafetzopoulos, D., & Tsiknakis, M.N. (2005). Biomedical Informatics in Support of Individualized Medicine. ERCIM News, 60, 12-13, January 2005.
- Tsiknakis, M.N., & Kafetzopoulos, D. (2005). ERCIM Working Group on Biomedical Informatics. ERCIM News, 60, 15-16, January 2005.
- Potamias, G.A. (2005). Mining Distributed and Heterogeneous Clinical Data Sources. ERCIM News, 60, 33-35, January 2005.
- Symeonidis, A., & Tollis, I.G. (2005). Network Visualization in Biomedical Informatics. ERCIM News, 60, 54-55, January 2005.
- Chronaki, C. (2004). Second OpenECG Workshop. ERCIM News, 58, 74-75, July 2004.
- Dimitriadis, S., Marias, K., & Orphanoudakis, S.C. (2003). Retrieval of Images based on Visual Content: A Biologically Inspired Multi-Agent Architecture. ERCIM News, 53, 18-19, April 2003.
- Leisch, E. (1998). Contents and Use of a Healthcare Domain Reference Data Model. ERCIM News, 35, October 1998.
- Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). An Integrated Architecture for the Provision of Health Telematic Services in a Regional Network. ERCIM News, 29, April 1997.
- Zikos, M., Kaldoudi, E., & Orphanoudakis, S.C. (1997). Image Processing Services in Health Telematics Networks. ERCIM News, 29, April 1997.
- Chronaki, C., Zabulis, X., Tsiknakis, M.N., & Orphanoudakis, S.C. (1997). Web-based Medical Services in the Regional Health Care Network of Crete. ERCIM News, 29, April 1997.
- Markatos, E.P., & Chronaki, C. (1996). Caching, Prefetching and Coherence in the World Wide Web. ERCIM News, 25, April 1996.
- Orphanoudakis, S.C., & Chronaki, C. (1996). Content-based Image Similarity Search on the Web. ERCIM News, 25, April 1996.
- Orphanoudakis, S.C. (1996). FORTH"s Links with Industry. ERCIM News, 24, January 1996.
- Manganas, A. (1996). KNOSSOS Technologies - A Spin-Off Company from FORTH. ERCIM News, 24, January 1996.
- Tsiknakis, M.N. (1995). CoMed - Cooperation in Medicine. ERCIM News, 21, April 1995.
Foreword
- Tollis, I.G., & Patrignani, M. (2010). Special Issue on Selected Papers from the Sixteenth International Symposium on Graph Drawing, GD 2008. Journal of Graph Algorithms and Applications, 14(1), 3-4.