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Publications

Publications of Computational BioMedicine Laboratory (CBML)

Technical & Research Reports (57)

ICS-FORTH Technical Reports

  1. Katehakis, D.G., Kouroubali, A., Karatzanis, I., Manousos, D., Kondylakis, H., Kavlentakis, G., Stathiakis, N., Koumakis, L., Chatzimina, M., & Marias, K. (2018). Personal Health ICT Systems to Support Integrated Care Solutions.  (2018.TR472_ICT_Systems_Integrated_Care_Solutions.pdf).
  2. Pavlidakis, M., Mavridis, S., Sfakianakis, Y.S, Symeonidou, C., Chrysos, N., & Bilas, A. (2018). Flexy : Elastic Provisioning of Accelerators in MultiGPU Servers.  (2018.TR474_Flexy_Elastic_Provisioning_Accelerators_MultiGPU_Servers.pdf).
  3. Armen, A. P., & Tsamardinos, I. (2014). Estimation and Control of the False Discovery Rate of Bayesian Network Skeleton Identification.  (2014.TR441_Bayesian_Network_Skeleton_Identification.pdf).
  4. Kouroubali, A., Katehakis, D.G., Berler, A., & Tsiknakis, M.N. (2012). Electronic Health Records: An Implementation proposal for National Health Care organizations.  (2012.TR431_EHR.pdf).
  5. Zabulis, X., Manikis, G., & Karamaounas, P. (2011). Retinal Images Analyzer.  (2011.TR416_Retinal_Images_Analyzer.pdf).
  6. Kondylakis, H., Doerr, M., & Plexousakis, D. (2006). Mapping Language for Information Integration.  (2006.TR385_Mapping_Language_Information_Integration.pdf).
  7. Chronaki, C., Kouroubali, A., Esterle, L., Orphanoudaki, E., Roumeliotaki, T., Stathopoulou, A., & Tsiknakis, M.N. (2006). eHealth Consumer Trends Survey in Greece: Results of the 1st phase.  (2006.TR365_eHealth_Consumer_Trends_Survey.pdf).
  8. Katehakis, D.G., Sfakianakis, S.G., Anthoulakis, D., Kavlentakis, G., Tzelepis, Th.Z., Orphanoudakis, S.C., & Tsiknakis, M.N. (2005). A Holistic Approach for the Delivery of the Integrated Electronic Health Record within a Regional Health Information Network.  (2005.TR350_Holistic_Approach_Delivery_Integrated_Electronic_Health_Record.pdf).
  9. Papadopouli, M., Shen, H., & Spanakis, E.G. (2005). Modeling client arrivals at access points in wireless campus-wide networks.  (2005.TR357_Modeling_clients_arrivals_wireless_campus-wide_networks.pdf).
  10. Messaritakis, G., Zacharioudakis, G., Lalis, S., & Houstis, C.E. (2000). Mapeditor: An Extensible Framework for the Dynamic Manipulation of Spatial Data Objects on the WWW. 2000.TR273. 
  11. Katehakis, D.G., Chalkiadakis, V., Tsiknakis, M.N., & Orphanoudakis, S.C. (1999). A Distributed, Agent-Based Architecture for the Acquisition, Management, Archiving and Display of Real-Time Monitoring Data in the Intensive Care Unit. 
  12. Pnevmatikatos, D., Markatos, E.P., Magklis, G.I., & Ioannidis, S. (1998). On Using Network RAM as a non-volatile Buffer.  (1998.TR227.NVRAM.ps.gz).
  13. Kaldoudi, E., Zikos, M., Leisch, E., & Orphanoudakis, S.C. (1998). PLEGMA: An Agent-Based Architecture for Developing Network-Centric Information Processing Services.  (1998.TR228.AgentBased_Architecture_for_Network-Centric_Inf_Proc_Services.ps.gz).
  14. Kaldoudi, E., Zikos, M., & Orphanoudakis, S.C. (1997). An Environment Supporting Visual Information Processing Services.  (1997.TR205.Environment_Visual_Information_Processing_Services.ps.gz).
  15. Markatos, E.P., & Chronaki, C. (1996). A Top-10 Approach to Prefetching on the Web.  (1996.TR173.Web_Prefetching.ps.gz).
  16. Orphanoudakis, S.C., Chronaki, C., & Vamvaka, D. (1996). I2Cnet: Content-based Similarity Search in Geographically Distributed Repositories of Medical Images.  (1996.TR161.I2Cnet_Search_Geographically_Distr_Repositories_Medical_Images.ps.gz).
  17. Blazantonakis, M., Moustakis, V.A., & Charissis, G. (1995). Deep Assessment of machine learning techniques using patient treatment in acute abdominal pain in children..  (1995.TR154.Assessment_ML_techniques_patient_treatment_acute_abdominal_pain.ps.gz).
  18. Blazantonakis, M., Marazakis, M., Moustakis, V.A., & Potamias, G.A. (1995). Using Logic Minimization to Support Learning from Examples.  (1995.TR144.LML_Logic_Minimization_Learn_Examples.ps.gz).
  19. Orphanoudakis, S.C., Chronaki, C., & Kostomanolakis, S.G. (1994). I2C: A System for the Indexing, Storage, and Retrieval of Medical Images by Content..  (1994.TR113.Indexing_Storage_Retrieval_Med.Images.ps.Z).
  20. Chronaki, C. (1994). Trace-Driven Simulation of Data-Alignment and other Factors affecting Update and Invalidate Based Coherent Memory.  (1994.MASCOTS94.DATA_ALIGNMENT_IN_VIRTUAL_SHARED_MEMORY.ps.Z).
  21. Markatos, E.P., & Chronaki, C. (1994). Using reference counters in Update Based Coherent Memory.  (1994.PARLE94.Reference_Counters.ps.Z).
  22. Petrakis, E.G.M., & Orphanoudakis, S.C. (1993). A Generalized Approach for Image Indexing and Retrieval Based on 2-D Strings..  (1993.TR103.Image_Indexing_Based_2DStrings.ps.Z).
  23. Petrakis, E.G.M. (1993). Image Representation, Indexing and Retrieval Based on Spatial Relationships and Properties of Objects.  (1993.TR75.Image_Indexing_Retrieval.ps.Z).
  24. Markatos, E.P., & Chronaki, C. (1993). Trace-Driven Simulation of Data-Alignment and other Factors affecting Update and Invalidate Based Coherent Memory.  (1993.TR93.DATA_ALIGNMENT_IN_VIRTUAL_SHARED_MEMORY.ps.Z).
  25. Costaridou, L., Stefanou, S., Hirsch, J., & Orphanoudakis, S.C. (1989). Image Reconstruction through the Primate Cone Mosaic.  (1989.TR017_Image_Reconstruction_Primate_Cone_Mosaic.pdf).
  26. Kolountzakis, M., & Orphanoudakis, S.C. (1988). Computing Line Sums on a Mesh Connected Computer.  (1988.TR013_Mesh_Connected_Computer.pdf).
  27. Orphanoudakis, S.C. (1988). Supercomputing in Medical Imaging.  (1988.TR012_Supercomputing_Medical_Imaging.pdf).
  28. Moustakis, V.A., & Orphanoudakis, S.C. (1987). Requirements Definition for an Integrated Hospital Information System.  (1987.TR007_Integrated_Hospital_Information_System.pdf).

M.S. Theses

  1. Astrinaki, M. (2019). An open and interactive pipeline for variant analysis and downstream exome sequencing analysis. December 2019.
  2. Kornaropoulos, E.M. (2012). Dominance Drawing of Non-Planar Graphs. 
  3. Maniadi, E. (2011). Analysis and Visualization of Metabolic Networks: A Hyper-Graph based approach. 
  4. Armen, A. P. (2011). Estimation and Control of the False Discovery Rate in Bayesian Network Skeleton Identification, with Application to Biological Data. 
  5. Triantafullou, S. (2010). Learning Causal Structure From Overlapping Variable Sets. March 2010.
  6. Moudatsos, M. (2008). Dual Graph Partitioning of Cellular Networks: Inferring and Quantifying the Graph Properties that Quarantee a Partition Result. December 2008.
  7. Oikonomou, Th. (2007). InBrAiN: An Interactive Tool for Brain Analysis and Visualization. May 2007.
  8. Kondylakis, H. (2006). Quete: Query Processing in Distributed Database Systems.  (pdf).
  9. Papoutsidis, E. (2006). A Biomedical GRID Infrastructure to Enable High-performing Data Mining and Knowledge Extraction Operations. April 2006.
  10. Symeonidis, A. (2006). microRNA Regulatory Networks and the Gene Ontology: Analysis and Visualization. April 2006.
  11. Moustakas, I. (2005). A Biologically Inspired Architecture using Autonomous Agents for Content-based Image Retrieval with Application to Brain Magnetic Resonance Images. April 2005.
  12. Papamanthou, Ch. (2005). Computing Longest Path Parameterized st-Orientations of Graphs: Algorithms and Applicataions. 2005.
  13. Arvelakis, A. (2005). Using Treemaps to visualize Gene Microarray and Phylogenetic Data. March 2005.
  14. Zacharioudakis, G. (2004).  Smart service discovery protocols over Bluetooth ad-hoc personal area networks. 
  15. Lelis, P. (2004). An Environment for Designing, Composing, and Editing Standardized Clinical Documents. April 2004.
  16. Kontos, A. (2004). Design and Development of applications supporting mobile access to clinical information systems. April 2004.
  17. Tzelepis, Th. (2004). Design and Development of Clinical Imformation Systems, based on Archetypes Methodology. April 2004.
  18. Kaoukakis, S. (2004). Design, development and comparison of alternatives architectural approaches of communication based on HL7 Standard. April 2004.
  19. Spanakis, E.G. (2004). Routing ISSUES in mobile ad-hoc wireless networks. April 2004.
  20. Koumakis, E. (2004). Uniform Modelling and Intelligent Data Processing in Distributed and Hererogeneous Clinical Information Sources. April 2004.
  21. Dimou, Ch. (2003). Implementation of a Medical Collaboration Environment, based on XML Technology. November 2003.
  22. Chatzaki, A. (2001). Design and Implementation of Security Services in a Healthcare Telematics Netowork using Cryptographic Smart Cards. November 2001.
  23. Tzourmpakis, St. (1999). Feature Correspondence Using the Geometry of Scenes Containing at least Two Planes. November 1999.
  24. Tzova, E. (1999). Grouping of Image Features on Principles of Perceptual organization. November 1999.

Ph.D. Theses

  1. Koumakis, L. (2014). Computational methods for knowledge discovery from heterogeneous data sources: methodology and implementation on biological and molecular sources.. 
  2. Kondylakis, H. (2010). Ontology Evolution in Data Integration.  (pdf).
  3. Tsiaras, V. (2009). Algorithms for the Analysis and Visualization og Biomedical Networks. November 2009.
  4. Spanakis, E.G. (2009). Cross Layer rate adaptation in wireless Ad Hoc Network. November 2009.
  5. Papadakis, S. (2009). Wireless Network Device Position Location System. November 2009.
Found: 57 publications